© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0005900.1
CCATATGGAAAGATTTTTACGTTACAGACATACAAGTTACAGCACAAGCAGTTTTCATATGCTTGAACATCTAATGTCAGCGGTAGCACATTAACCAAAAGTAAAGTAAAAATCACATCTTGGGAGCAAGCCCCGTATCATGCTTGGGAACATCAGCTAATATCAGTCTTAAATCACATCTCAGGAAACTGGCCGGCAAGTCATCCTTTCCTACTCGCTGATCCTACAGCAGCTGCTTGCAGTGACAGTCATGGTGTGGCCTTGTCAGCAAGTGAGTGGGCAGCCGAGCTCCTTCGCCGCCGCGGTGAGGAAGGCGAGCGTCAGCCCGGTGGCGCGGCGGCTGTGGGCTTCCCACTCTATGCATCTCTCCACATCGGCTTGCCAGTTGATGATGCTTGCTGCCAAGCACTGGTAGGTTGGGCTCTGGATGCCATTCCGGTGTTCCCCTTGGATGAGCTTACTGGAGTTTATTTGTCCGCTGTTCAAGATGTCGCGAAGGACGGACATGCTGAGTGCACGGACATGCGCGCTGGGGTGCGAAAGACAGCGGATGGTGGTTGATAGACGGCACTTCAGCAGATTGGAGAGGCCATCAGCGACGGATACACCTGAATCTCCCCATTCGACGATGAGATGGACTGCTCTGGCGGTTACTTCCAATAGCTCTAATTGTGGTAAAGTACAAGCTTCACCATCAACAAGCATTCCATCAGTTGCTCGAAGAAGAAGATCTGAAGCACTAGCAAGGATCACCAATGCTTCTGGGCTATCGTGGTTCCTCATAAGCTCTGCTATCAGCTTAACTATTCGCTGGTTGACTCTCCACATCTTCTGACCTTGCTCATCATCTCGAGCAATCCAGGGCTGCAAGTCCTTCTCGGCCTGTGAAAGATACAAGAGTCGGGGAAGATGACTGAGGAAATGGGTATATTTTATATCGGTAATGATGCTGATGCTTTGAAACCAAGAAATGAGAACAAAAGAAGCTACAGTATGGAACTTTTTTTTTCAAAGGTACATACAATATGAAGCTTTTAAATATGATAACAAGTATGTAAATATAACAATAACAATATCTTGACCTGCAGAACGATAGCAGCTGAAGCCTTGGTCGGTGAGGCTGAAACAATGTCACAAAGCGCATCCACAACCTTTCTCCAACCCTGATGAGCTGATGTACTTTCTGCAGACATCTGCATTTCGGGAGATGCAATGAGCTTCTGCCAGAGCAATGAGACAACAGAGAAGCATAGCTCCTGCTTCTCTGACAGTACAGATCTTAGGAGAGTTTGAGAACCTCTGTAACCCCCATTTCGGTCCATGGTGAGGAAGTTTGCCAAATCAGAAGCTTCCACCTGTAAACTTGCAATGGCTTTCCCAGAAGTACTTGCGACATCACCATTTAGTATAACATCTTCTGCACATTTCAAGAGTGGTCTTGCAAAACCATTTTTCCTGTGTGATCTTGAAGCATCCTTTTTTTCCAATGCACCACCATCTGATGAGTTAATGTTCTTTTCCTCAATGGGAGGTTCATCCTTTTTTACTGGTGTAAGGGTCAGGTGAGCTTCTAGAGGCTCAGCTTTGTTCACAATGGAGGTCACTGTTTTACCATGCAAGTCAATCAAATGGTAAAGGGATGATGCCCTGGTAGAAATCTCAGCATCCCACTTGCATTGCTTCAGCGCAGACAGTGCATTTAAGCATGGCCTGGATCGACGAAATAACTCAGAAACATGAGCAGCAACCATAGCTGCTGCAACAATCTCATTTGAACTATAACTCCATGAAGTACCAACAGATGATGGCTTCAAGGAGAACAGAGCTTCCAAGATGCCAAGTATTCTACGAGTATGAAGAATCGCTGAGCTAATGCTATTGTGTAGCTCGTTACTGATACCAGTGGTTTTTCCAGGTATGACTATCTTTATGGAGTCCTTCAGATTTGAATGGTTCCCATTCTTGGAAATAAAAGGGAACAGCTGGAGCTCACAAGATAAGGCACAAACGGCTGCTAGAACGTATGAGTCGAATGTAGCAACTGGTCCTTGTCTCTTCTTACATCTGTTTCTTCCATTGGTTAATCTCGAATCATTTGTGACCTCCTCAGAGGAATGATTATCACTACCAGTTGGCCTTTTACTTCCCCCAGGCAAAGCTTGATGACTGACGCAAACAGTTAATACTACAAATAGTAATCTGGACGCAAGGTCCATTGAAGCACAGGACTCCACAAAGAGTGAATGTATCATTGTTCGGAGTTCAGCAACAGCAAGGTTCTTAGATTGACTTCTTGGTTTCCTGGATTGTTCAGAGGTTTCTGATGGAAAAGTTCTTCTCAGTATAGCTTCAACTGTTGCCACAAAAATTCTCATAAGGCATGCTTCAGATGGACTCCCACGAGGTAAATACTCAAATACTTTCAACAATGGCAAGTATAGGCTCCATGACAAAGTAGGTGGCTGAAGTGGAGCAGCTACAACAATTTCAGGCAAATCAACTGCTGATGAACTCAGAGGTAGCAAACCATACGCAGCCTCCCAGATGGTACATATTCTCCACTCAACATCGGGACCATGAGCACATAGCATGGAAGCAATGCCTTGCGCAGTGGCATCAATAGTGGCTTCAGATGCAGGAACTTCCAGCTGCCTTTTGTACGATGATACATAGCCACCTAGTGGCTCATGATGGAGTTCAACTCCTTCGGCATGTCTCAGTGGAGGAAAAAGTAATGTCGGTTGGGAGAGTATTCGGAAAAGTAAAGCAGCAGACGTATCAGCAGCGATACCAGCTCTCATTGACATTGCAGTTCCAATAGCACGCAGGAAATGAAGATGCATCCAGTTCTTTGGAAGCCGCATGCCAGAATCGTAATCTTCCGCTGCTCTAAGGAGTTCAACAAGCTGTACTGCTGCATCAAGTGCATCTGGGGCCCATGATGGTGGTGCCTCGAGAAGACCAAAAAGCAACCTTTGGGTAGCACTTGGAGTAGCAATTGCATAGTATCTATGAAACAAGCGAGCATATGGTTCAAGAGGAGGGAGCCCCGCAACCAAATGTTCGTCCAATGGTGTGGTCGGTGGAGGTAATAGAAGTGCAGGAACAGCTGCCGCAGTCAAATTTGCTGTCTCATAACGAGCTACTTCCTCATCACAGACACTTAGTATAACTCCAGCTCCATTGGCAACAGCCCATCTGGGCGTGGATGGCATAAGTTGTGGGTGCTTCCCAGATCCTCGGCTGTAAGCAGTTGTTGGAGGCTTCAATTCTCCACCAGCTGCGTATTTTCCCATGACTCCACCACACCATCTAAAATAGTCACTTCTAATACCCAGAGGTGCAGCAAGCAATATGTCTGTGATCCAAGGAGATAGTGGCCTCAATGGCTTCCGGTCAGGTTCATTTCTTGGAGAACCGTTAGCCCTTTTCTCCATAGACTCACATGATGAGGCCTGATCAGATGTGCTGCTACATTCCGCTTCACTATGTTGGTGATCAACTTTGAAGATTGGCCTGTTGTAGTGAGTTAGAACTCTAAGAATTTCTCCACAGGCCAAGGCCCACTGCTCCGAGTACTCTTTCTCAGAAGTATGGCTAAATAAAGAGATGAAGGACATGAACGGGAAACCATTTCTATCATAACTGAGTGTCCCATCTATGATGCGTGACAGAATCGGATGCACAACTGCATGGCCATGCTCAGGATGATGAAGAACAAAAGTTGCTAATACTTCATCTACAAGGCGCTTTTCTTTTGATGGATAGCAACTTTGAATTAGCTGAGCTATATCTTCAGGGAATTGCTCACTGTCAGCTGTAAACTGGCCAAAGTACTCAACATAGGCCAGAATTTGTGCCTGTTTTTGTTGTGAATCCTGTGGTGGGGGCCAGAACAGTGATGAGAACTGGAGCCCATCAATCCACTTCTCATTTGAAGCTGACATACTTGGTAGCTCAAGAGCCTGCCCAAGAAACTGAGAGAATTCTCAAAGAGAAAGAAAGAAACTACACAAACTGCTCCAGTTAGCAATAAAAGCACCTGTAATCAACACCACGTTGAAGCCGCCAGTTAGTTCATCCATTTATGCCACCAAAGTCCAAATCTTCTTATAAGCTACTTGCCTTGGTATCAAGAAACTTCGAGCAAGAAAGTTATAAGAGTGCTATCCACTTCATTCAATCAACCCCCATAACGGGGGTCTGCATCTCACAACGTGACACGTTATCATATCAACCAATGCCAACCATATGAGCTTCAGAGTCTCTACACTCGATCAGCCTTTCAACCAATCCGGACCTCACGCGGCGTAGACGGCGGCGGCGGCGAGGGGATAGACGCGCGCGGCGGCGACACGGGCGGTGGAGGAGGCGCAGGGGAAGGAGGAGGAGAGAGAGAGGGAGAGAAACGGCTCGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0005900.1 | 1 | 4330117 | G | A |
| Osa01LNT0005900.1 | 1 | 4330360 | C | A |
| Osa01LNT0005900.1 | 1 | 4331862 | A | G |
| Osa01LNT0005900.1 | 1 | 4332236 | T | C |
| Osa01LNT0005900.1 | 1 | 4332542 | A | T |
| Osa01LNT0005900.1 | 1 | 4332574 | C | T |
| Osa01LNT0005900.1 | 1 | 4334993 | A | G |
| Osa01LNT0005900.1 | 1 | 4335095 | C | T |
| Osa01LNT0005900.1 | 1 | 4337134 | G | A |
| Osa01LNT0005900.1 | 1 | 4337436 | C | G |
| Osa01LNT0005900.1 | 1 | 4337988 | G | T |
| Osa01LNT0005900.1 | 1 | 4333746 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0005900.1 | osa-miR5807 | Cleavage | 3.5 | 20.028 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR5814 | Cleavage | 5.0 | 20.12 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR5837.1 | Cleavage | 4.0 | 23.867 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR5516b | Translation | 4.5 | 24.189 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169a | Cleavage | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR164d | Cleavage | 5.0 | 21.845 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169b | Cleavage | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169c | Cleavage | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169d | Cleavage | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169e | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169f.1 | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169g | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169h | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169i-5p.2 | Cleavage | 5.0 | 11.795 | 1 | 22 |
| Osa01LNT0005900.1 | osa-miR169i-5p.1 | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169j | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169k | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169l | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169m | Cleavage | 3.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169n | Translation | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169o | Translation | 4.0 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR172a | Translation | 3.5 | 15.544 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR172b | Translation | 4.0 | 15.544 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR172c | Translation | 4.5 | 15.544 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR166i-3p | Cleavage | 4.5 | 22.375 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR172d-3p | Translation | 3.5 | 15.544 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR444a-3p.2 | Cleavage | 3.5 | 22.298 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR169r-5p | Cleavage | 3.5 | 21.452 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR444d.2 | Cleavage | 3.5 | 22.298 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR444e | Cleavage | 3.5 | 22.298 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR444f | Cleavage | 4.0 | 22.298 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR810b.1 | Translation | 5.0 | 24.17 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR1435 | Cleavage | 5.0 | 18.216 | 1 | 20 |
| Osa01LNT0005900.1 | osa-miR1865-5p | Cleavage | 4.0 | 16.135 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR1876 | Cleavage | 3.5 | 17.219 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR1882e-3p | Cleavage | 4.0 | 24.012 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR1883a | Cleavage | 5.0 | 23.345 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR1883b | Cleavage | 5.0 | 23.345 | 1 | 24 |
| Osa01LNT0005900.1 | osa-miR2099-3p | Translation | 4.5 | 13.118 | 1 | 20 |
| Osa01LNT0005900.1 | osa-miR2864.1 | Translation | 5.0 | 17.402 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR5516a | Translation | 4.5 | 24.189 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR5521 | Cleavage | 4.5 | 20.163 | 1 | 21 |
| Osa01LNT0005900.1 | osa-miR5508 | Cleavage | 5.0 | 11.887 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0005900.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0005900.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0005900.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0005900.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0005900.1 | 1 | gp1a | Morphological trait | Panicle/flower | RM1 | R753 |
| Osa01LNT0005900.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)