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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0077000.1

GCTGGTATAAGAATAGCAAGAATGTAACATATAATATGTCGCGAGTATACACTGTAAAACTTCGGTAACAACAGTTTGGGAAAGGAAGAAAAAAAAACTCAGGTAATACATAATGGACAGTTTAGGTAATTAGAAAAAACAAAACAAAACATATAAAAGAAGGAGAGAAAAGAGAAAAAAAAGAGAAATGGGAAAAATTCCGGCATACACCAGCACCAGCTCTCTTGCTTTTTCACTGCCACTTCACTTGATGAGCACATCTTTAATTTTTCACCTTCGATTTTTTTTTCACCGCGCCCTTGCAACATGCCACAGTAGATCGAGCAGTAGTACACATAGCCAAACAAATTTTTACCGAGGTGTAATAATTTGTAACAACCACAACCACCGCAACATTTTGCATATATACCCTTGTCTTCCTTTTTTTTTAACCGCGAGAGCGAGGTGTTATTACCGCTCCTCTGTGCCGTTTTTCACCGCACCAAGTTTTAAACCCTCTCCGTGAACCCTCACGAATGGAGGGTCCTTATTAAATTTACCACAACAAATCAATAAATTACCACGCCACCAATTCCTTTTTTTTTGCTTTTAACACTAGCTAAGAGGAGACGCGAGATGGGAGAGACCACTGTAATTAACACAAGAACGAATCAAGAAATGGATCGATGCTACTAGCTTTTTCTTGCTAGGAACATCCAGCGACGAACGATCGATGGGCATGCATGCAGCTTGAAATGGGCGAATTTTTCTTTCTTGGCATGGAGATGTATAGCTGCTAGCTTGCATGAGGAATCAATGGAGAAATATGCCGGAGGAGGAAGAGAATTCTTGAGGTTTTAGGTTTTTGAGCTTTTTGATGGTGTTGAGATATGGACGAGCCATGGAGGAGGCGACAGGTAGGTAGATACAAATGGTACAAGAGATGGAGGAGGAAGAAGAAGAAGAAGCCATTGACGCGCATGGAGGTATGCATGTGTAGGAAGGAGAGAGAGTCATCCTCGTCGTCCTCGTCCATGTTGTCGCTGTCCACGCCGCCGCCGCCACCGCCGCCGTCCGTTCGGTTGAAGGCGTTGTTCGCCGCCGCCGGCTGCTGCGGCCTCTGCTCCATCATCTCCTTCATAATGTCCTCTGGCTTCTTCGCCGCCGCGCCGGTGAAGAACTTGTTGCCGGCGACGACGCTGCCGTTGCTCGCCTGCATTTGCATGCCCCCGGAGCCGCCTCCTCCTCCTTCGCCGTTCGCGCCGTTTGTACTGCTGGTGCCGTTGCCGTTCTTGGTCGTCGTCACGGGCTGTGGCGGCGGCGGCGGCGGTGTCTGCGAGATCGGCGCGGCGACTGTCACCGCCGGCTCCGCGTGCTCCGGCGGCGGGAGGGCCGGTGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTTGAGAGCCGCCTTGTTGCGGTAGAGGGCGTCGAGCTGGTGGAAGTAGGGGCAGGTCTTGGAGTCCTCGGGGCGCTTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.317812
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0077000.1 10 19929028 T A
Osa10LNT0077000.1 10 19929958 A G
Osa10LNT0077000.1 10 19930783 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0077000.1 osa-miR5078 Translation 4.5 13.311 1 21
Osa10LNT0077000.1 osa-miR5155 Cleavage 5.0 18.786 1 24
Osa10LNT0077000.1 osa-miR5075 Cleavage 2.5 23.821 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0077000.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0077000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0077000.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0077000.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0077000.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0077000.1 10 Rf1 Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus