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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0077400.1

CAATATCAAACAGCAGAAATACAGTATATTACAAATTTAGATATAACAAGGCACAATTTCCATATCATATTAGAGGGAACATATATAATTAGACAGATATCAGAAAGATGTTATCTCTGTAAAAAAAGAAGGTAAAACTGCAATGCTGGGGTGTGATCAGCAGCTTGCTTATACATCATGCACCCGAGATGCATTTTCAGCAGCGAGCTACATATTAAAGTTATGCAAAAGAAGGCTAATTAACAAACTATCGAAGTCAATCTCTATCAGGTTCTATTAGCACGGCCCCTGAGAACTTCCAAATCCATGTCATCAGGGTCCGTGGCCTGAATCTCAAAGTGCACACCGTCAAGCTCGTGCCGAAATTGGTTCCTCGACACGGCGTATATGGTCTTGGCTCGGATGCGGGAAACAGAAGGGGACCATGAGATGAAGAATATCTTGCTCTTCCTGCAGTTGTCGTCGCTGACGAAATCCAGATCGTAGACGGCGTACCGGCAGTCGTCGGCGGGCAGCGACGCCGTGAAGTCGTCGTAGCTCTCCCCCGGCGCGCCGGTCTTCTCGACGACGATCTCCTCCCGCCTGTCGTCGATCTTGAAAATCACGTAGCGGTGCACCTTCCTCCTCTTCAGCTCCCAGAACGCGCTCTTGCTCTTCTCCGGCACCTCGATCCACGCCGGCGAGCCGCCGCCACCCCATGGCAACACCGCCGCCGCCGCCGCCACCATGTGCCCCGGCGCGCGCGTCACGATCCTGGTCTCGCGGCGGAGGGGGGACTGATCCGAGGGAGGCGCGTGCAAGAAGGCCAAGGATTCCCACGGGCCGAGGGGAGGAGATTGGGTCGGAGGATTATTCTAGTGGGGTTTTTTGGGGTTGGAGGTGGAGTTCAACGAGGGCATTGATGAGATCATGGGGATTCGTGCGGGGCGGCGTCCCGCCGC

Coding Potentia
Explanation CPC Score
noncoding -1.14316
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0077400.1 10 20161076 G A
Osa10LNT0077400.1 10 20161085 T C
Osa10LNT0077400.1 10 20162340 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0077400.1 osa-miR5534a Translation 4.5 19.098 1 21
Osa10LNT0077400.1 osa-miR5534b Translation 4.5 19.098 1 21
Osa10LNT0077400.1 osa-miR168a-3p Cleavage 5.0 20.031 1 24
Osa10LNT0077400.1 osa-miR444a-5p Cleavage 5.0 19.77 1 21
Osa10LNT0077400.1 osa-miR5485 Translation 4.5 18.027 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0077400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0077400.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0077400.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0077400.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0077400.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0077400.1 10 nan Morphological trait Panicle/flower RM171 RM333
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus