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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0077500.1

AAATGACTGATGCCATTGTACATAGATTCTCAACATCTTTACCAGAAAACAAATCCCAACCAACTCCTGCAATTTACATACAGCTACAAAGAGGAGTAACTGGTGATTTTGGGGCTATCTAGGATCACAGGGACGACACACATTTGTAACCAAAATGCTACAATACAGTAAAAACTACAGCAGCCAAAAGCTGCAGGATTCACTTCACCAATCAAGAAAATCTTGGCTGCAAATAGGGGAAAGAAACACAGCTGGGGAGGCAAAAAAAATAACCGCTGCTCATCTCCCACATTGAGCTGCTATGAATCCAGATATATTAACAACCAGAAAGAAGAAACAATCAAGCATTGATCTCTGCATTACACTGCTCCTCCCTGTGGCAGCTTCTTCGGCTCCAGAACATGCCTGAGCAGCTAGTCCGGTCAAGATCCTGCTGTTCCCTCTTGTCCATCTCCATGCTTGCGCAGTGCGATGGCTGAGGAGATTGCACCTCGGAACCATCCTGTGTTTCTATGGCATCACATGGATCATCGTCACTGCACCTGCAGGTCGGGAGGGCAGACGATGGAAATGGGCTGCAGGTTAGTGGGCAGACTAGCTCTGAAGAGACAGCTGCAACACGGTTGCGCCTTATTTCTGCTTTGCTGATAGTTGCTGGTGAGTCTACAGATCGGGTGTTTAGCATGCATGGATTACAGAACGTGAGTGCTGAGCTAGATTTAAGCCCTTCTGTTGGCGTGCTTGGCAACTTGGTAAATGACATTATTCCATTCCGACAAAGAGGGCACGGAATCGATCCAGGTGGGCCAGTGAACTCAACACGGGTATTGCTCGTTGAGCAAAGATAAAGAGCACATTTGATGCAGAACTCATGACAACAACCTTCAGCAGCTACTGAACAAGACCTTTCAAGGCAAACTGCACAAAGATCACTATCATCCACAGAGGCTACGGTGTGCAGCAACCCAAATTCTCTAGCTATATTAAGTATGCTCATGAATGGCAAGGCAAGATAATTAGATGGTTGATATGCAGGGATACTCGAGTTTGAGTTTGGAGAAAGTAATGGCTCCAAGAAACGGCGTCCAAACATCCTAGCAACATCAATGGGAAGCCACCCATTACAGTTCAGTGTCAACTTGCTAGCGCCTTTTGACAGAAGTAGCTGGCAACACTCAGCATTTCCTCCACCAGCTGCATAATGCAAAGGAGTACTGCCAGCTCCTATCAAATTTGCTGTAGTGCCATACGGGAATGTGACAGCTGACACATTAGCACCCAAGTCAATCAACAATTGCATGCAATCAAAATGACCATTCAAAGCTGCCATATGAAGTGCTGTAACACCGCCATCAGCAGGTTTGTTGATATATCTCAAACGAGCAGATTCATTAAATTTCAGTCCCAAAGAAGAACAAGGACTGCTCCCACTATTCGTCTGACATTCACCACCATCCACCGTCGAAGAAGCACCATCCTCTAAGGGAGCACTTGGGACAAAGTCCGCGAGTAAAAGACGAACGCACCGAACAAGTCCATCATGTGCTGCGAAATGCAATGCTGTTCGGCCACTCAAGTAATCCGCCCTGGTAACATTGCATCTGAAGAGCAGAAGCATCTGAACCACCTCCCAGTGGCCATGCCGGCATGCGTGCATCAACGCAGTCTGCCCGCAGTAGTTCCGTACGTTCACATCCGCGCCCTTCTCCAGCAACAGCGTCACAATGTCGAGGTGGCCCTTAGCGGCGGCGAAGTGGAGCGGGGAGTTGAGGCCGCCGAAGGTGGAGTACCGCGCCAGCGCCGGGCTGAGCTCCAGCAGCATCCGCGCCTCCACCGCGTCCCCGTCCCGCGCCGCCGACACCAGCCTCTCCCCGGAGGCGGAGCACCCCAGAGAGTTCCCCATCGCCGCCGCCTCCGCCTACGCCGCTCGCCGGCGACGGCGAGAGCCACCTCACGAGGCTAACACCTCCGGCGACGGACCGCCGGGGCTCAGGATCGCGCTGGGGCTCGCCGGCGGCGAGGGGGCGCGTTTGAAATTGCCGGAATTTCGGGGTCTCGAATTTTCCGCACGCCGGAGGAGAGGAGGGGGGAAGTGG

Coding Potentia
Explanation CPC Score
noncoding -1.15695
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0077500.1 10 20185945 C G
Osa10LNT0077500.1 10 20186286 A G
Osa10LNT0077500.1 10 20186789 C T
Osa10LNT0077500.1 10 20186975 A T
Osa10LNT0077500.1 10 20187290 A G
Osa10LNT0077500.1 10 20188235 T A
Osa10LNT0077500.1 10 20188797 A G
Osa10LNT0077500.1 10 20188862 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0077500.1 osa-miR398b Translation 4.5 22.709 1 21
Osa10LNT0077500.1 osa-miR417 Cleavage 3.5 13.427 1 21
Osa10LNT0077500.1 osa-miR1442 Translation 4.0 12.343 1 20
Osa10LNT0077500.1 osa-miR2106 Cleavage 5.0 17.349 1 21
Osa10LNT0077500.1 osa-miR5150-5p Translation 4.5 15.873 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0077500.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0077500.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0077500.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0077500.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0077500.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0077500.1 10 nan Morphological trait Seed RZ811 RG561
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus