© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0006100.2
AGTACGCAGCCATAACTATATTGGTTCCATATAAGTAGTAGTTGTTCGAACAACATTTCATAGCACAGAAGGTGGCAAGGAAGGTAAACATAACATTACTTATTTACAATGATAATCATGACCTAGGGGTCATGAACAAAAGGGCTTGCTTCTTAGCCTCCTCTAGGCTTGCAGCTAACTTGTTGCTTCTACACTTCTAGCTTGGGTGGTTCGTTCTGTACATATACACAAAAGACTTGCTGATGGACTACATATATCCGTCTCATTCACTGTCAGTGGGTTTCTTCTGGGTACTATCCTTGAACAATTTTTTGGCAATTGTGGTGGTTTCTGTAGGTCTACCTCTTTTTTTGGGTGTGCTCTTTGGCGCCAGTGAAGGATCTGCCTGTGGAGACTCATCTGGAGATTCAGCGGTGACCTTTGCCTTATCCGAAGTATCACGGGGAACAATTGTAGTTAAAGATGCACTTTGTGAGATCTTCTCTTCATGATGAGTGCCAATTTTTGCCTTAGTATCAGTAGAGGTCTTTGCAGTGTGAGATGGCATAGAGTAGCCTGAGACAATAATGCTTTTTTTGGTAAATACTAAGGAGCTTGATTTGCTAGTTGGTGTCTCATCTGTTGCAGCAGCAGGAGTGTATTTTGTTGGTGTTGAAGTGCCCTGTGCTGGTATGATGGCTAATTGCGATTCGGTGCTTGTTTCACTTGGTGTTGGTGCTGTCTGGAGAGAACTGCTTGAGCTTGCCGATACAATTGCTGATGCTGGCTGTGAAGTACTTGGCGACATAAGCAGCGGTGGTTGATTTGCTGGACCAGAGGATATAACACTATTAACCTGGAGAGTTTCTTCGCTTCTGTTAATATCCTTTGTGAAGCTGACATTCCATAGAAAACCATTGTCAACAAGTGCTAAGATTTCCCTTGGAATGAATTCACTGTCCGGTGGATTTTCTTCGATCAGAGATTCCACTGGCCTTCGTATGATGCGTTGCGCAGTTTTTCCAAAAAGAATAAATGTTGCATCTTTGATCTGGTATTCCTATATAGGAACAACTGGTGCACTTGTAGGCTGAGCCATATGGTTTTGAGGTTTTGTAGCATAGGTGACATGAATTGTACCACTAGGAGTTTTCGTTGCATATTCTTTTAACAACCACATTTACTATGAAGCGTGCTTCCTTATGTTTATGAGGATTAAGGTCAAGAATGTCTTTAAGTGTCTTTTCTTGTGGGTTGCTTTGGTTGAATCCTGCAGGAGGAGCGTCGTTCCACCTGATTGGCTGAAAGTTGGTGCTAAAGCTTTCTTTCAGTTCCACTACTTCAGGTATTTCAAAGTTAATGTACCATTTGCATGGGGAGCTTCCAGTCAGTGTAAGCCCTAAGCCTTTGTAGTTCTTGACAAGCGTGCCAACAAACACAACCACCTGAGGTTGTCTTTGGCCAGCATTGTAGATATTCTCAGCATCGAAAGCAGTTGCTCGCTCTCCACAAAGTGTGAGAGGTAGTGTGGAATTGCTTGCATCACATATTTATAGTGTTCTTTTTAAACTGTCAGTGTTCCTTGACTGAGGACGTACAGTAGACGTTGTGCCAATTTCAGCGATAACACCCATAATATCAACATAAAAGATGTTTTTGTCCACAAGAGAGGGAACATCTCCAAAAGGTGTCAATGAAAATGTTATAGCAGGGAAATCAGCAGGCACATCGACACATTCTTCTAAAGTTGTCCATTTAGTGAATAGGATCATTAGGCTATGTGCAACTGGCCTATATGTCCTATTTGCATATCTGACAGTGAATGAATCAATGTAGTAAACTTTTCCTTCTTGAAGAAGAGGTTTCAAGTTCACTATTACATGCTGATACATTTGAGCATGTATGCTGTTCCCCGTTTCATCCAGTAAGACAAGATCAGTGTGCACAATTTTTCTATCATCATTGAGATCATGAAAGTCCCATAGCCTAGAAACTCTTGCCTTAATTCGTATGTTTGAATCACCACATGACAGCTGTGAGATGAGTATGTGCGCCATTTGGAATATATAATATTAAGAGGGGAATATTGCAGCGGGTATATAGCACATGATAGCTGCTGAAGACATATATTTATTCCAAAATGTTTGTACAAAATTTGTCCCTGTTTAGGCCAAAATAGCTAAGTATGCAACGGCGGAGCCTTCGAGTCTTCGACGAAAGAACGACGGGGACTGGAACGACAGACGATCAGCAATAAGAGAGATCACACTGGCTACCACCAAGAACACTAACTGAAATCCGAAATCTCCTAAAGCAGCAATAATAACAACGAACAACTACCCACAGAACCGATCAGAGCTGCCAAATCACATCAGCAGCTCTTGCACTTATTACGAAAAACAATCAAGAACCTTTGAAACTGCGATCTAACCCATGCAAATCTTCTCCCTGTGGTAAGATTTCAGTGTTCTACGTTTTCTTTTAGAAGGGGCGTCTCAATTAGGGTCTTGCAAGCCTGCAGGGAAAACGGCCGAAACAAGTCACAGATATTTACAAAAAGTTGAATTTCACTACCCAAAATTCTCGAGGCCTCACTATGATGCTTGTGCCGATTTCCCTGAGCTGCGGCCTCTGAATCCAACCACACTGAGCTTACTACCCAGCTTGTTCAGAGCATCCCCTTTCCGACCCTCTGGTCTCGGTCGGCTCTTTGCAACCTTGGGGCTAGGGCTGCTACTCTTGCTCGGCTTAGCAGATCGCACTGGTTTTGCTTTTCCTGAAGATGTCGATTTCGACCTTGGTTGACTCCTAATTGGCGAGCGCCTTCTGGATGAAGTTGTGTCCTTGACAATCCTTGATGACTTGGTCTGCAGTGCAACTCCCCTTCTACCCTTCTGGTTTACTACCTTTAGAGCGCTTGGTCGTCCTTTGGTACTAGTGTACTGTGGGTTGACGGCCGCCCTTCTGACGTTATTAGTCGTCAGTGCCTCTAAGCTCTCGTTTTTCTTCATAGCCTCTTCTATCCGTGTTGCTAAAGTCACATCTTTCTTCGCAACAAGGCTTGTAACTTTCCCTTTGGCTCCCATGCGTGCTGTTCTTCCAGTTCTATGGAGGTAATCAATAGAGTTTGATGGGAAGTCAAACATGATGACATGGTCAACATCCAAGTCTAGGCCTCGAGCTGCTAGGTCAGTGCAGACCAGTGTTGGGCAATCCCCTTCTTCATTCCGGAACTTGTTCAGGTTCTCAACCCTCTCTTCAGCAGGAACTTCCCCATGGTAGTTTACAGTAGATATCTGATTTTCAGTCAGAAAATGGTCCACGGCACGACTTGAATTCAAAGTATTGCAGAACACCATAACTTTATTTCCCTTTGCTAAACTTGGCTCAAGAACCTGCAGAAGAGCCTCTAGTTTGTTTTCTGAACCAGACAGTTTGATGAAGTCATGCCGTGCAGTTGCAACTCTTTTTTGAAAGGTTGTTGTCCGTAAATGAACAATACCTTCAAATTCCTCATCTATCAGCTTTTGTACTGCCTTGGTCATAGTAGCAGTAACTAATACAGTTTGGAACCCCTGATCGCCAGGTTTTGCAGCACGATTCTTCAAAGGAGCAAGAAACTTCCTAATGTCTGGTCCAAAACCTTGATCAAACATCGTATCTGCCTCATCAAGGACCAGATACTTGATATCACCATAAACCATGTTTCCATCCTTGATATGATCAAGAATCCTCCCAGGAGTCCCAACAACCATGTCTACAGGCATGTTCAGAGAATCTTCCTGGGGCCTTATACGGCTGCCTCCACTAACCATTGTTGACCGAAAACGTGCGTGATGGCTTATGGACTTTGCGACACGGAAGACCTGCTCAGTCAGCTCCCTTGTGGGGCAGAGAACTACTGCTCTTGGCCTCCTTGGTTTCATTGACATTCCCAACATTGCTTCATCACGACGCAGTAGCTGAACAAGCGGGAGCAGGTAGGCGAGCGTCTTCCCGGAACCGGTGTGCGAGCCAAGCACAACACTGGTGCCAGCCAGCACGGCGGGCACACCAACGCACTGGATCTCGGTGGGCTTGGAGATACCCATCTCCCCGAGCGCGGCCATCACCTCCTCCCCGAGCCCGAGCTCCTCGAAACTATCCACCACCTCGACCCTCCTCTTCTGCTGCAGCTCCTGCGCGCCACCGCCGCCGCCGCCCCTCCCCTTCTCCCGCTGCGCCGGCCTCGGGGTAGCAGCGGGCACGCCCTTGAGGTGGCGCTGCCGGAGGCGCTCGAGGAGGAGCTCGTGGCGGGACGGGGCCTCCCTCGCCGTGGTCTCGGGCTCGGTCGGCGCGGTGACGGCGGATGCCCCCGCCGCCGTGGTGGTGGTCGTGGTGGTAGCGAGCGCGGCGCGGAGGAGGCGGAGGCGGAGGAGAGGGGACGGGCGGGTCAGCATGAGGCACCGCCCGGCGGCGCCGGCCATCGCCATGGGAGGAGGAGGGCGAGGGTTTAGAGGTGGCGGGTTTTGTGATGGGGAGGAGGAATGGGGT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0006100.2 | 1 | 4485252 | T | A |
| Osa01LNT0006100.2 | 1 | 4485512 | A | T |
| Osa01LNT0006100.2 | 1 | 4485563 | A | G |
| Osa01LNT0006100.2 | 1 | 4485782 | G | A |
| Osa01LNT0006100.2 | 1 | 4486055 | T | C |
| Osa01LNT0006100.2 | 1 | 4487608 | T | C |
| Osa01LNT0006100.2 | 1 | 4488377 | A | G |
| Osa01LNT0006100.2 | 1 | 4485562 | A | G |
| Osa01LNT0006100.2 | 1 | 4488960 | G | A |
| Osa01LNT0006100.2 | 1 | 4489116 | A | G |
| Osa01LNT0006100.2 | 1 | 4489693 | T | C |
| Osa01LNT0006100.2 | 1 | 4485555 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0006100.2 | osa-miR5837.1 | Translation | 5.0 | 13.567 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR6246 | Cleavage | 4.5 | 13.93 | 1 | 23 |
| Osa01LNT0006100.2 | osa-miR1861o | Cleavage | 4.0 | 17.19 | 1 | 22 |
| Osa01LNT0006100.2 | osa-miR319a-3p | Translation | 4.5 | 16.63 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR169p | Cleavage | 5.0 | 18.325 | 1 | 22 |
| Osa01LNT0006100.2 | osa-miR169p | Translation | 5.0 | 16.932 | 1 | 22 |
| Osa01LNT0006100.2 | osa-miR172d-5p | Translation | 4.0 | 20.894 | 1 | 20 |
| Osa01LNT0006100.2 | osa-miR529a | Translation | 4.5 | 18.615 | 1 | 20 |
| Osa01LNT0006100.2 | osa-miR1425-3p | Cleavage | 5.0 | 18.887 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR1861a | Cleavage | 4.0 | 17.19 | 1 | 22 |
| Osa01LNT0006100.2 | osa-miR1861d | Cleavage | 5.0 | 17.19 | 1 | 22 |
| Osa01LNT0006100.2 | osa-miR1869 | Translation | 4.0 | 19.536 | 1 | 24 |
| Osa01LNT0006100.2 | osa-miR1846e | Cleavage | 5.0 | 17.217 | 1 | 20 |
| Osa01LNT0006100.2 | osa-miR1846e | Translation | 4.5 | 19.853 | 1 | 20 |
| Osa01LNT0006100.2 | osa-miR2098-3p | Translation | 4.5 | 21.478 | 1 | 20 |
| Osa01LNT0006100.2 | osa-miR395x | Cleavage | 4.5 | 17.169 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR3980a-5p | Translation | 5.0 | 17.248 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR3980b-5p | Translation | 5.0 | 17.248 | 1 | 21 |
| Osa01LNT0006100.2 | osa-miR5155 | Cleavage | 4.5 | 20.328 | 1 | 24 |
| Osa01LNT0006100.2 | osa-miR5155 | Translation | 5.0 | 20.109 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0006100.2 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006100.2 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006100.2 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0006100.2 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0006100.2 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0006100.2 | 1 | gp1a | Morphological trait | Panicle/flower | RM1 | R753 |
| Osa01LNT0006100.2 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)