>Osa10LNT0078300.1

AAGACTAACTTCAAGTTTGTAGGAATTAAAACAAGTATCCCATCTGGAATTCATCCTCACCGATCAACGAGTATCGCAGTTAAACAGCAGAACCGACAAATACAAGTAAGCTGACAAACTATGAAAACTGAAGTATCTGAAATACACTAACATTCTTAAGGCATAAAGCACGAGATATGATTATTCATAATGCCGGTCCCAACGAAGAGTCATCTGATTGAGCACTTGGAAAATCACTCAAAAACGGCGAGGGGGAAACCGATCCATAAGCCTCCCAGATGGGCACTCATAAGCCATGTGACCACGACCACCGCAGTTGTGGCAGATCATGAACGCACCGGCCATGCAATCACGGCTCATATGACCAACCTGATTGCAAGCACGGCAGACCACATCACTGTATCCACCACGGAAGGGAGGAGGCCCACCCCTCTCATTGATAGCATCAGATTTGGGGCACTCTCGGGCCAAATGTCCTGACACGTTGCATAGGTTGCAGACGGGCTCGTTAGGGCAGTTACGAGCAAGATGGCCACTCTTCCTACAGTTGTTGCAGGCCTTCTCATTGGTGCATTCCGCAGCAAGGTGCCCTGGTTTGTAGCAGTTGCTGCAAAGCCTCATTTCACCTGGCAGCATTGGTGGAGCACTGCATTCTCTTGCAATGTGACCCGACTTGCCACAGTTGCGGCATATCCCTTCATTTGGGCAGCTGTTAGCCATGTGGCCAGGTTCTTTGCAGTTCCAGCAGAGATCTTTGGAAGAACACTCTGCTGCAATGTGCCCTGGAAGCCCACATGCATGGCAAAGAGCCACATTTGGACAATCTCTAGCAAAATGTCCTGGACGCTTACAATTGTTGCACAAATCATTAGGAAATCTGCAGGGAAGAAAACAAAGAAGTGGAGGATACAAAAGCTCAGATACATTGCAGATTGACAGGAATCTGAAATTCGTTTATTAAATTGCACTCTTCAGGTCATGAATCATGACAAACTAATGTAATCATGAGAGGGTTTTCCGAAAATCACGAAACAACATTAGCTTATGCCTTGTTGAACATTTTGCACACTTAAACCAAGTGATCGTCCAATAAAGGGAATGAGGTCCATCGTACTCCATGTACTCTTTTACTTTTACTAGCAGAGTGCCCATGCGTTGTAATGGATTTTGAAGAAATAATAATAAACTATAGGAGTTTCAACAGGACATGTTAGAATTGATAGTTGATACATATACCCGACTGTTTTAATTCGAGTCTAGGCATAGTAAGTATAGACATCATAATGGGGAACTTCATTTTATCTAAAAGGAGAAAACTCTTCACTTTTTTAGAGACCTCATTCATTGTAGAGGGAATGGTCACTTGCTACACTGGAGAACCTTGTACAATTTGGGAGTCATGGAGAAGTATATTGGGTATTGACCAACTCTGAAGAAGTTGCTTAAATTTTGAAAGTAGGATCGTCATGGGCCCACATGACAGTGAGTAGGTGGTGGTGGCAGATTCACTGCCACCACCACTGGAGTCTTTTAGAATTGTATATAGAGTATAGATATAGACAAAAGACATGAAGACAAACCAACTTCTCCTTTAAAGAAAAAGATAAACTAACTGTTGCCTTAGCCTAGATTACAGCAATGGGTTGACCACATGTAGTGTCGCCCTATCCATATTACATACTGGAGCAACATAGGTCATGGATTCATGGCCTTAGATCAAGAGGCTATACAAATACTACATGCATAAGTAATTATTGTGGAAGAAAAACAGAGAATATATACATCCAAACAGAAATGACAATTATGGTTATCCTGCCAACATGATCAAGAGAGGTTGATAGCAAGCGGCAACATTAGGATATACGGTGCCAGATACTCATTTTCTTTATTTATTTAAACAAGACAACTCAAACCTGCTAGGACCACGGCGGCTGTCTCTCCTGTATGGCGCATCACGGTATGAGGTACGCTCAGTACGAATCCTGCGGTCCTTTGGTGGCGGGCTGCGGCTGCTCATCGTCAAACCTTCCTTCTAAATCTCCAAGCTCCAACCAAACTGCGAACACCACACCACAAAACCAGCACCTCCAAGACTCCCACAACCTGTTAGGCTGTTACAACCCTCCCTTCTTCCTTCCTTCCACGGGGGTCGGGGGGCGGATCTCCAGCAGGCGCGAGGCGGACGAGGAGACGAGCTAGCTAGCCGCGGAGCGGCGAGGGCTGCTGCTCCCGTGGCGCTCGCCGGCGCAGCGCGGCGACGGCGAGGGGGGTCGCCGAGTGGATTGGGATAGGAAGAGGAGGAGAAGCGTGGCG

Explanation	CPC Score
noncoding (weak)	-0.848508

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0078300.1	10	21311927	T	A
Osa10LNT0078300.1	10	21315281	A	C
Osa10LNT0078300.1	10	21314898	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0078300.1	osa-miR5830	Cleavage	5.0	11.873	1	24
Osa10LNT0078300.1	osa-miR7695-3p	Cleavage	3.5	19.741	1	21
Osa10LNT0078300.1	osa-miR529b	Cleavage	5.0	16.183	1	21
Osa10LNT0078300.1	osa-miR1429-5p	Translation	5.0	14.108	1	21
Osa10LNT0078300.1	osa-miR2097-3p	Cleavage	3.5	15.854	1	22
Osa10LNT0078300.1	osa-miR2871a-3p	Cleavage	4.0	7.241	1	21
Osa10LNT0078300.1	osa-miR2871a-3p	Cleavage	5.0	10.7	1	21
Osa10LNT0078300.1	osa-miR2871b	Cleavage	4.0	7.241	1	21
Osa10LNT0078300.1	osa-miR2871b	Cleavage	5.0	10.7	1	21
Osa10LNT0078300.1	osa-miR3982-3p	Translation	4.5	24.064	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0078300.1	10	nan	Physiological trait	Sterility	RZ811	RG561
Osa10LNT0078300.1	10	nan	Morphological trait	Seed	RZ811	RG561
Osa10LNT0078300.1	10	qRf-10	Physiological trait	Sterility	RZ811	RG561
Osa10LNT0078300.1	10	Rf1	Physiological trait	Sterility	nan	nan
Osa10LNT0078300.1	10	nan	Morphological trait	Panicle/flower	RM171	RM333
Osa10LNT0078300.1	10	nan	Physiological trait	Sterility	C701	C16

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus