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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0078600.2

GGGAGGAACTACACTCTCTTTATTTGTAGACTTTCTATGAAAATTTTATGTTCGGCTTACACGAAATAAAATGTAGCGCATGCATATATGAATAACTCAAACTACAGTTTGGCAGCCGACACAATGTTGGAGCTAAATTCCCATAGTTTCTTGGCCAACTCTGCATTTGAAGCCTGTGAGCTTGGGGTCTCTAAATTGCAGTTGCTGAAGTACTTCCCACTTATTCCAGTAACTTGAGGATGTAATGCCACATAACATGTCGTTGCAGCACCCTGTTCTACAGTTTTACATACGATTCTTCCAATGGTGTTCACCACAGCATTAGCCATAGTCCAGTTCTTGAATAGGTTGGTTCCAACAAAACCGGGATGGATCGCATTTGCTGAAATGTTCACACCATCTCCCTTCAGAATTCGTGCAAGCTCGGTAGAGTGCAAAATGTTGGCAAGCTTGGACTGGCCGTAAGCAATATAAGTGGAGAATCTCGAAAGATCTTTTACACTATCGAAACATATCCCTTCAGGATAGGTCAAAATGTGCCCCGAAGACGACACATTTATGATCCTTCCTTCGACACCAGTTGTCCTACTTGTGCTCTTCATGTTCTCCAGTAAAAGATTCGTTAGAAGAAAATGGCCAATGTGATTAGTTGCAAAATGCAATTCTAGGCCGTCAATGGAGCGTATGCAGTCCTTGGACAGGATTCCAGCGTTATTGATGAGTATGTTGAGAGGTAGGTTCAGAGAGTCAAACTCGGAGGCAAACCTCCTCACCGAATCCATGGAGCTGAGGTCCATCTCCAGCACATGGACTATGGCGCCGTGGATCTCCGCCCGGATCGCCTCGCGGGCCTTGTGCCCGGCGGCGACGTTGCGCACGGCCATGACGACGCGCACGCCGCGCAGCGCCAACACGCGCGTCGTCTCCAGCCCGATGCCGCTCGACGCGCCTGTGACGACGGCGGCCAAGCCCCGGGCGTCGACGCCGGCGGTGACCTCCTCGGCGGTGGAGGCGCCGGAGAAGCCAGAGGGGCCATTTCGGTTGAAGTTGAAAAACCACATGGGTGGCGTCGAGCTCTGGGATATGGGGTTTGCAACCTGAGAGGCTGAGACAGCAGAGCAGACAGGTACTAAGCCGATGGGTGCTGGTTTTCTGCTCAGCAGTATGTCAGCGACAACCTGCAACCACAGTCACTCGAGCAGAGAACGCGAGAGAGAATGAACACAAGAACACGATGAACTCAGGTGTGTTTTGGCGCTGCGTAGAAACGTTCCAGCATTTTCTCTGTTTTTTCTTCCTTTTATTCAGTACAGAAAGTAAAAACGTGGGATCAAGCCGCGCGACGCGCTCCGTGCGGACTAAGCGCACGTCAAGCTCGACATGTGCACGACCGAGCAAATCGCAGTCATGCACTCGACTGGAAAACAGAAGAGAACAAGCTAAAAAACTGGGGGAGGAGAAACTGACTAACAGGAAACAAATGAAAGAACCAATAAACGAGCTAGCACAAGTTTTACAGCTAACGAGCTATAGCCTACAGATGCTGGCTACACGATCGAAGGGAAGCTTGTAGAGAAAACCTTCTGATATCGTCTCAAGAAGATGTTTCTCGTCACGCTAGCTGCAGTCTGGAGGAGCAACGAGCACCTGGCGAGCAGGGACAACGACACCCGAAGCCGGCGCGCGCTGCCTCCTCCTCCGTCAACCCGCTCACCTCGTCGTCGGCGCAACCACTTCCTCTTCTTCTTCCAACATCTCCTGCAAAAGATCCACGC

Coding Potentia
Explanation CPC Score
noncoding -1.13769
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0078600.2 10 21440649 A T
Osa10LNT0078600.2 10 21442662 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0078600.2 osa-miR5542 Cleavage 3.5 21.309 1 21
Osa10LNT0078600.2 osa-miR5789 Translation 4.0 21.598 1 21
Osa10LNT0078600.2 osa-miR396c-3p Translation 3.0 17.445 1 21
Osa10LNT0078600.2 osa-miR164d Translation 5.0 7.885 1 21
Osa10LNT0078600.2 osa-miR1851 Translation 3.5 17.399 1 21
Osa10LNT0078600.2 osa-miR396f-5p Cleavage 5.0 24.209 1 22
Osa10LNT0078600.2 osa-miR5147 Cleavage 5.0 15.83 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0078600.2 10 nan Physiological trait Sterility C701 C16
Osa10LNT0078600.2 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0078600.2 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0078600.2 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0078600.2 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0078600.2 10 nan Resistance or Tolerance Drought tolerance C809 R716
Osa10LNT0078600.2 10 nan Morphological trait Panicle/flower RM171 RM333
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus