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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0078800.1

GTGCGATGTCACCCACAACAATATTCACAAAAAAAATTGAGTGAGTCAGAGAAGGGGAAAAGGAGCAAATAGCATCAGGAAAATGAATACTGTTTTCTCCTTGTATAATCTTGGATTACAGAACGAAGAGCAAAGTTTGGGATCAGGTCGCGGTGCACAAGAGGCTGCTTGGTCATGGGAGACACTTCGTGCCCTTCATCAAACCAATTGATGATCGCTTCAGCTTCATAGGTGAACCCGTCTGCTGCAATGCAGGGTTCCCTCATGATCTCCTGAGAAATCGGGCAGATGAAGTGGGAAGGAATGGAGTCTTTATCAAACTGTGATGGTACAGTTGATGCTGGAGAAAATGCAGTCAGGCTCCTTCGGTGTAGCAACGTTTCCGGTTGTCTGACACCATTGTCATGGTCAGGATGTAACTGAAGATACTCCTGCTGTGGCTTGATTAGTTGTCCTGTGGCTCCGAAATCACTCTTCATGTCGACAGTTTGTTGTCTCAAGATAAATTTATCGGTAATCACTTCTTGTCGATCCCCCAAGATTGTGCTCTGGTGATTCCTAGGTATGTCCATTTCTTGTTTTAACCGTGTAAGTTCTAAGTTTGCTTTGACAAGAGCTCCTTCCAATTCTTTCCTCCTTTTCACCTCCTCCAAGTACAACTCCTCGAATTGTTTGACTTTCTGAAGAGATGAAACCACTTGTTCATCTGCTCTCTGGCGCCTCAAAGATTCGCTTAAAGCTCTCTCCATCAAGTTCTCAGCTGCTACGCGTGCATCATTGAGCTCATCAGAAAACCCCAATTCCATCTCATTGTCATTCTGTTCCTGTTCAGCTGACGGTTGCAGAATGGTCTGACCAATATCAGGGCTGGGAGGAGTATCAATCTTGAAAAGTTGGCTGAGAGGTGTAACTGATTGTGTGGTTTCTACTTTCTTGTCCCTGGTACAGATTAGCTGTTCCTTACACACAAACCAAATCTGGCATGATGCGTCAGCTCTCTGCATGATTTCTGTTGCTATCTTGGACTTTGGTTTGTCCATCTTTCTTGAGTAGTGCTTGTCTGCAGCAGCTGCAATTACTAACTTGGTGATGCCATGAGAGGCAATAAGTTCAAGAAGACCAGCTACAACATCTTCTTTCTCAATGACTAGTTTCTCACATTTGACCTTCATTTTCCAGCATTGATGGACGTATTCGTCTAAAAGCTTATTCACCCTTTCACGCTCAGTTCTTCTGAACAAGCTTACTTGCTCCGGACTCACGTTACTAACATGAAACTGAACTCCCACTGAGATTAAAAGAAGAAGATAATCTTAGTTAATATTTAGAGAATGTATTTTGCAAAAGAGGACAACATGAACATCCTACTGCTGTCTTTCCCCAAGGAACAAAAGAGTCACAGTCCACGAATCTTTCACGATGTACACGAGCTTCCTTGATAGGACAGGCAGCCATGGAGGATCATTAGACGACACATTCTTAAACCGAACAGTTAAAC

Coding Potentia
Explanation CPC Score
noncoding -1.24797
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0078800.1 10 21479886 C T
Osa10LNT0078800.1 10 21480940 T C
Osa10LNT0078800.1 10 21481395 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0078800.1 osa-miR5337b Translation 5.0 13.673 1 21
Osa10LNT0078800.1 osa-miR1861o Cleavage 4.5 16.431 1 22
Osa10LNT0078800.1 osa-miR440 Translation 4.0 23.568 1 24
Osa10LNT0078800.1 osa-miR1430 Cleavage 5.0 21.077 1 21
Osa10LNT0078800.1 osa-miR1861a Cleavage 4.5 16.431 1 22
Osa10LNT0078800.1 osa-miR1879 Cleavage 3.5 9.653 1 24
Osa10LNT0078800.1 osa-miR2865 Cleavage 4.0 21.404 1 22
Osa10LNT0078800.1 osa-miR2922 Cleavage 4.5 16.363 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0078800.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0078800.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0078800.1 10 ste10.2 Resistance or Tolerance Drought tolerance RM147 RZ500
Osa10LNT0078800.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0078800.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0078800.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0078800.1 10 nan Resistance or Tolerance Drought tolerance C809 R716
Osa10LNT0078800.1 10 nan Morphological trait Panicle/flower RM171 RM333
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus