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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0078900.1

ATACACTTTTCCAGCTTGATAGCCACCCCCTTTTATTATTGCCGAAATCTAGTTTCGACAAGATGTAATACTAGAATCATCAAAACTTCCACTGGGAACTGTATAAACAACCTTAAGCTTCATTTCCTCAATCACCTTATCGACTTCCTTGTTGAACTGGACCGATACAAAAATGGCATATAGTTGGTGGGTCAGTAGTCATGTCATTGTAACAATAATGCATCACTAATAAAGCTTGCAAATCATCTATTTGCATTTTATGCTCACAGTATTGGGGGGAATCTCATCCATGTCAGTACTGGTAGCTACTAGCTTGGTGCTCTGGATCAAGAATTTATCCTTGCATTGCATATTTGGTGGGCACTATTTATGTGCCTGGAGCGTAACTACATCACCCAAGAACAATGCAGATATCCAAATATCAAGACCAAACAAGGAGCCTGAAGAGAGCCATGGCTTGGCATACCATAAAATGGCCAAATTAGGAACATGTATTCCCTCCGTCCCAGAATAAATTAATCTAATACAAGATGTGATATATACTAGTACTATGAATTTGGACAAGTACTGGGATATGTCACATCTCGTATTAGATTAACTTATTATGCGGCGAAGGTACTATTTACTTGTTATTGTGCAAGAATCCCATGGCTGGACAATGCTCGTGTTCGGCCGGACAAAATACTTCCTCGGTAATGTCGTCTTGACATGAAACAAACTTTCATCAAGCCTTCTCGCCAAGTTTTAGAAAATATTGGTCATGAAATGGAAGGCCATGGACCTTGAATGCAGCATGATGCTCGCTGTTGTTCACCACCTTGAGATTGCAATAGCACCGCTTATCCAGCTCAAATAGGAAAGTGAGATCCTCAGGGTAAATGGAGATCAGCGTTCCGCTGCCGCCCATTGCCACACCTTTCGCTTTGTTCAGAGTAAAAATCCAACCTTTCTTTCCAAGAACTGAGTTGCACTGAAACAAACTGAAGAAAAAAGAGGAACCAACGATTTGTTTGTAACATAAATTGGAAGGGCAGGAGGAGATAGTAGTAGGGGAGAGAGAGAGAGAGAGAGAGACGGATGTGTTTGCTTTGCTAT

Coding Potentia
Explanation CPC Score
noncoding -1.14921
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0078900.1 10 21504816 G A
Osa10LNT0078900.1 10 21505846 A G
Osa10LNT0078900.1 10 21505202 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0078900.1 osa-miR418 Cleavage 5.0 18.16 1 21
Osa10LNT0078900.1 osa-miR418 Cleavage 4.5 10.336 1 21
Osa10LNT0078900.1 osa-miR418 Translation 5.0 21.188 1 21
Osa10LNT0078900.1 osa-miR815a Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR815b Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR815c Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR1436 Cleavage 4.0 18.31 1 21
Osa10LNT0078900.1 osa-miR1439 Cleavage 3.5 16.044 1 21
Osa10LNT0078900.1 osa-miR3979-5p Cleavage 5.0 8.926 1 20
Osa10LNT0078900.1 osa-miR2873b Translation 4.5 14.214 1 21
Osa10LNT0078900.1 osa-miR5161 Translation 5.0 13.407 1 20
Osa10LNT0078900.1 osa-miR5338 Translation 4.5 7.929 1 21
Osa10LNT0078900.1 osa-miR5490 Cleavage 2.5 18.508 1 21
Osa10LNT0078900.1 osa-miR2095-3p Translation 4.0 16.228 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0078900.1 10 nan Resistance or Tolerance Drought tolerance C809 R716
Osa10LNT0078900.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0078900.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0078900.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0078900.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0078900.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0078900.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus