>Osa10LNT0079000.1

ACAACTTGCCGGTAGAATAAATAATTGCCTAAGACGACAGGGACAGGAACCAAAATTTTTCAGCATACATGTGTATATATTTTATATATACTAAAGGAACAGAACTAATAAAAGAATGAAATGTCTCAGAATCCCAGAAACATAAGATGAAAGTGAGACCAAAAAAGGGTGGTTTAGGGAGCCTCTTATATAATAGGATGCCAAATCAAAAACATTTTGGCCAGACTTATTTGTTAGCAGTGTATATTTTGCTCGTATTTATAGTTGGTACTTCTCCATATCCTCAAAAAACGATTCTGTTATGTTCCTCCCTTCTGCTTAAGTGGATTCCTCCTTCCAAGATGCCAGTTTCTTCAGGAATTCCATCACCTCAGCTGGGTCCCGTACGGAATAGAAAGCATCAGTATCCTTGGGCACAGATGACACCAAAATTCCAAAGCCAATGCTGTTTGCCTTCAGAACCTTGAATGCATCCTCATCAGTCTTGTCATCTCCAACATAGATAGGAAGAACATCTTCTTTCCCACATAGTCCAAGTGACTCCAGCAAAAATTCCACAGCTTTCCCCTTGTTCCAGTCTATCACAGGTCGAACCTCAAGAACCTTTCTCCCATGGGTAAGCCTTAGACAAGGGTAATTCTTCAGGACGGCAGTCACACGTTGATGAACTTCTCCGTAGTCATGTGGTGCTACATTGCGGTAATGAACGGACACACAGAATTTGTTATCTTCCATCCTTGCACCATCAATGTCCTTAATACTTTCACTGAGCTTTTTGTACACCTCGCTAATCATAGGTAAAAACTCACTTGCAGGTTGGAAGAGGTTGACCTCTTTACCCTCTGAATCAGTGGACCTGATACATTCCACATGCTGACCACTCGAATCAGACTTCCTAACAGGCCCCATGATATCCATTCCATGACTTCCAGCGTAATACAGTTCAGTTAGTTTCACAAAGTCAAAAACCTTATCACGAGATCTTCCACTAATGATCGCAGTGGGAAAAAGTGATGCCACATGCTTCACAGCAGAGCGCATCTCGTCAGACATTACTGCATTTTCAGGATTGTCCACAATCGGTGAAAGAGTTCCATCATAATCAAGGAACAGTGCCAATCTTTTACCTCTGGCAAGATTAACAATATCCTCAAATGATGTTAAAGCAGATGGATGGTTCACCACCCAATTACGGTATAGCAAATCAAGCTCGTCAGCTTGAACATCATTGGCAAAGTCCTTAGTCTGCCTCTTGCGAGGTGGCGAGGAGGCCAGCATGAGATCAAGCCATCCAGCGGCGCGGACTTCTTCGATCTTTCCAGGCAGAGGCTTCTTTTTCGGAGTGTTCAAGTACAGCCCGGTAGAGGGGAAACTCGTAGGTGTAGTGTACGTCATCACAGCAGATGGCAAGGCTAATTTAGGGAGAGGATCAGCAATAACAGGAGAGTTGCTTGTCTTCAAATCCATCAACAGAACTCTCCGCAGAGTTGTTGTAAGAACAGTTACTAACAACACAAGAGCAAGCAAGTAGACTATAGGATTCCTTAAGAGTTAGACACTCAACCAACCCTCTTGTCAATAAAAAACCAACGTTTCAATGTCTTCTTGTCACTGCAAACGTGCATACAACGCATCCAGCCCATTAAGCGGGAAGTTCCTGCATTCCCAATGCCGGCGAGCAGCCCGACGGCGGCGGCGGGAGCGGCGATGCGAAGCGAGGAAGGCAATGGAGGGGATTTGGGAGGAG

Explanation	CPC Score
noncoding	-1.07983

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0079000.1	10	21707528	T	C
Osa10LNT0079000.1	10	21710263	A	C
Osa10LNT0079000.1	10	21707155	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0079000.1	osa-miR395o	Cleavage	5.0	17.102	1	21
Osa10LNT0079000.1	osa-miR395v	Translation	4.0	21.591	1	21
Osa10LNT0079000.1	osa-miR1435	Cleavage	4.5	13.965	1	20
Osa10LNT0079000.1	osa-miR5079a	Cleavage	5.0	9.428	1	22
Osa10LNT0079000.1	osa-miR5155	Translation	4.5	20.277	1	24
Osa10LNT0079000.1	osa-miR5079b	Cleavage	5.0	9.428	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0079000.1	10	nan	Resistance or Tolerance	Drought tolerance	C809	R716
Osa10LNT0079000.1	10	nan	Morphological trait	Panicle/flower	RM171	RM333
Osa10LNT0079000.1	10	Qbph10	Resistance or Tolerance	Insect resistance	RM484	RM496
Osa10LNT0079000.1	10	nan	Physiological trait	Sterility	RZ811	RG561
Osa10LNT0079000.1	10	Rf1	Physiological trait	Sterility	nan	nan
Osa10LNT0079000.1	10	nan	Morphological trait	Seed	RZ811	RG561
Osa10LNT0079000.1	10	qRf-10	Physiological trait	Sterility	RZ811	RG561

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus