\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0080100.1

GCATTTGCATGTTCTTGGCTTTAATATATACGGATGACATGCCAGACAAAAAGTTAAAAGAAAGGTCGCGGCGAATGCAAGTCGAACGATCATGGATTAACCATGACACCTTGAAGCAAACATGGGTGAGGTTTGGCGAGTTGCTCTGCCTCAAGGGAGCAGCTCTCGCTCCCCACGCTATTGTTACTCTCAGGGACAGGGAGTGCCTCCTTGTTCTTACGGGGGGCACGGCATCGTACCCACAGGTATGAGAACCCTGCAAAGGCCGCCTGGCTCGCAAACTGCACGCGGTATACTAGGCTTATCTCCCACAAGCCACTGCCCACGTTAACGGCCAAGGTATCCGCATCATACCCTTCGAGGTCCGATTTGGAAACCATGACGAATGTCTTCTCGTCAAATGCAATGAGGTTGCGAGTGGCAAGGAACAGCGGTGGTTTCATTATTGGGCTGTCCAGGCAAATGGATTTCCCAGATTTCTTCACCCTAAGCTGGTAGAATTGCTCAACAGCCTGCCGCTGTGCAGAAGCTAATAGCACCCTTGGCCTGCGCAAGCGAACATGTTCATAAGCTTCAGCCGGAGTCATTTGTTTGTATTGCACCAAGTAGCAAAGAACAACTGTTGTGCTCCGTCCACGTCCAGCTTTGCAGTGAACATATGTCAACTTCCCACACAAAGCATTTCCTTCCAAGATTAAAACAACATAAATAAATACACGAGACAAACCTAGTTAAAAATCACAATTGCAACAGCACAATAGGATCTCTACGAAATTAATGAACTTAAATTTTTGTCTACCTCCCCATTAGAGGAAGTGAATATCACAACATGCACGAAAAGTAAAAATGTAGAAGAGCAAGCAGAGCAAAAAAGGCAGTAAATAAAAGGTCTTAAATTTTTTGTATCCACAACGTAGCAGCATATTCAGTCAAGTTTCAAGAGGAAACTGCAGTAGCATACTGCAAAACCAAATGGCGACGGCCATTATATTGGTAGAGTTAAGTACAATGCACAAATTATTTATTACAGGGTGTTGGGACCAACAAACATAAAAAACATCTCTTACTACAAACAAACCAAACCAAACATAAGGTATCAAATCACAAGTTCTGATATCTACTCATGCAATGAACAGTACAGTCAAAAACAAACTAGAATATACATAGTGATTCCGTCGTATTATAGGATATGCAATTTGAGTAGATTCTTACTGTGGATGAAGTCAGCAGCCCGGCAAAGGTTCTCAAATGATGGTGCATAAAGATAATCTCTAGTTGGTAACACCAGGTTTTCAATTCCATGAGCCTCATACAGGCACCTGGGAACCAGCCTCTCGTAGGATTCATTCAGTGTCACAACACCGCAAACTCCAAGCTCCTTCAGCCGTAGAACATCGCTGGGGAAAGGAACAGCACCGAGCAGAACATGCTCGTCGACCTGATCCCACCAGTGGAAGTGCGGCTCGAATCGGTTCCTGACGACGTTGTACACCAGCGTCGGGTAGAACAGCATCCGCGCGCCGACGCCCACCGCCGCGCGCTTCGCGTCGAAAGCCACACGCATCACCACCCCACCCTCCTCCTCCACCGCCGCCGCCGCCGCCGCCGCCCCACGACGCA

Coding Potentia
Explanation CPC Score
noncoding -1.32786
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0080100.1 10 22162024 C T
Osa10LNT0080100.1 10 22163112 A G
Osa10LNT0080100.1 10 22162792 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0080100.1 osa-miR160c-3p Cleavage 4.5 18.719 1 21
Osa10LNT0080100.1 osa-miR816 Translation 4.5 13.613 1 20
Osa10LNT0080100.1 osa-miR2873b Translation 4.5 10.211 1 21
Osa10LNT0080100.1 osa-miR5150-5p Cleavage 4.0 20.727 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0080100.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0080100.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0080100.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0080100.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0080100.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0080100.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus