>Osa10LNT0080300.1

GTGATGGCCAACAGCCACCTGCCCCAGTTCTTTAGCTTCTAAAGTCCAAGGGGCCAGACGTTCTTGAGATCGTTCAGACATTACCATCATGACTATGACACATAGCATAACTAATTAATACTGGATGGAAATTTCTGCTCTACCAGTAGTATAACAGCAATGAATTAATTGGCAGATATGTCATGGAAGTATATGTGTAAGAGATATCAGACCAACCAATGATCCATTGCAATGTAGTGCTGCTCATAATGGACGGCAACTCTATGTTAGTAATACAACAGGACGGCTCGACGCCGATTTGGAACTTCTGAAAGCAGCCCATTTCTTTAACGTGACCATGACACAGCATCGATCTCATCCCTGGCAGACTTGTATAACTCAAGCCTCTTAAAGCACTGCTGCCTTCGCTCCATAAGAGCAGGATCCTCATCAAGGAGTTGCGCAAGCTGCTTAGCATCTTTCCTGCCCACTTGGGTATAGAAATAGTTAAGCAAGGAACGCTTAGCTTCCCTGACTTGACAATGAACAACAGCTTTGGGGATAGTATTCTTCAATGTATCAGATACCATGCCAATGTATGAGGACACATTGGAAGCAATCCTCCTGAAGTGCGCGTCAGCATAACGATCAACAGAAGGAGTGGAAGGGTTCCCAGTTCCAGTCTTGTCCACTTCCTGTGGAAGCTTGCGGAAGAACTCCACTGTCAAGTATGCTGACTCCATATCAACCAGTCGTACAGTGGTTTTACGTCCATCTTCACGGAATCTCTCTAGGGCATGAAAGCATGCAGCCGCAAGCTCCGCTTGAAGAGTGGGAAACCTTTTCAATTCCTGGGTCTCACCGATGGATTTCCTTACCAGCTCTTTCAAAACATAATGCACAGCATCTACAGAAGCTTCAGCTGGCCCTCTAAAATAATTGAGAGCAGATTCAATCAGTCGGCGGTACCCTTGCTCAGGAGCAATTAAATGAGGTTGATAACCATCAGCTTCTGAGATAACACGCTTAACATTTTGCAGAGAGAGGTAGCGGTCAAATGGAAGCTTCCGCAGAGCAGAGGGGAGTTGGTTATCAAAGACACCATAAATTCGATCACCTCCAGGCCGTCCTCCATCAAGATGTTCTCTAAATATTTTCTCAAATGCACGGCAAAGCTCCAACACGAGGTATAGTTGAGCCCCAGCATCAGAGGCAATAGGTCTACCAATGTGATCCATCTCAGATTCAAGTTCATCAATAGTTTTGTTGATCAGAGATGTAATGCTTGGAATACGTGCCCTGATCACAGCCTCTAAGTGCTGTGAAAGAAGTTTGGCAAGATATTCTGAACCCATCCTGCTTGATAAATGAGAATATTCAGGACTAGAAGCAAAGAACTCCTGTTCTTTTCGCCTGGCAATAATCATATCAATATTCTTATTGATATCTGCTTGTGAACGATTAACAATCCCGACCCATGGATGCTGCAGTCTGTACGATCTTCCTTCGAGAACATCAAGTGCATTTGTTCCCTTGTCCATCAAATCAAGCTTAGTCAACACACCAAATGTCCTTTCACCAGTTGGATCAACATCTCGAGCAAGCTTAATAGCATCAGATGTTGCTATATCTTGATTGGCAGGAGATATAGCAAGTATGATGCAGTTTGGCTTGTCAACATATGAGCGCACCATATTTTCAATATCCTGGACAATGCTTTCAGGCTGTCCTTCTACTGCAACTTTAGTTAGACCCGGCAGATCAATCAATGTCAAGTTGACCACATGTGGTGAGTAAATGCTGAGATGAATTGGAACAGGTGATATTTGTTTAGTCTTCCCTGTCAGCCTATCAGTTTCATCTTGAATTTCCTTCCGCACAAGAGCAAAATCGTTGAACCGGCGCTTGGGCATATGCAAGAACTCAGCGTACTCCTGCACCCCGTCCTCCGTCTTGTGCAGCTGCAAAACCAGCGGCCTTCTCGTCACGATACCTGAGCCCCTAGGCAGGAAGTCGCGGCCCACGATGCTCTCCAGCACCGATGACTTGCCGGAACTCTGGCCACCGACGACGGCGACGGAAGGGAGCGCCTCCCACAGCGTGGGGAGGGAGGCGGTGCCGTCGCCGCCGCCGTGGTCCCCGAGGACGGTGCAGGCTCGCTGGATGCGGTTCACGAGCACGATCACGTTCTCCATCGTCGCCATCTCCGGCGAGGCGGAGGGAGGCGGCACCTCCTTGCCCGGACGAGGAGCGGGAGTGGAAGGTTCTAGAAGGAGGCGGAAGGTTCGAGAGGGAGAAAGCACTGTGTCTCTGTGGGCGAAGCGAAGGGAGCAGAGAGGCGTCACTGTCGCGACGGCATCGGAT

Explanation	CPC Score
noncoding	-1.29773

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0080300.1	10	22505945	G	A
Osa10LNT0080300.1	10	22506916	T	C
Osa10LNT0080300.1	10	22507391	T	C
Osa10LNT0080300.1	10	22508660	A	G
Osa10LNT0080300.1	10	22509817	T	G
Osa10LNT0080300.1	10	22509836	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0080300.1	osa-miR5542	Cleavage	4.0	12.905	1	21
Osa10LNT0080300.1	osa-miR5789	Cleavage	3.5	11.108	1	21
Osa10LNT0080300.1	osa-miR166c-5p	Cleavage	5.0	17.328	1	20
Osa10LNT0080300.1	osa-miR1426	Cleavage	3.5	18.082	1	21
Osa10LNT0080300.1	osa-miR2093-3p	Cleavage	4.0	18.191	1	20
Osa10LNT0080300.1	osa-miR2100-3p	Cleavage	5.0	22.674	1	22
Osa10LNT0080300.1	osa-miR2101-5p	Cleavage	4.5	20.518	1	22
Osa10LNT0080300.1	osa-miR2118i	Cleavage	5.0	21.617	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0080300.1	10	qTGWT-10	Morphological trait	Seed	RG561	RM228
Osa10LNT0080300.1	10	nan	Morphological trait	Panicle/flower	RM171	RM333
Osa10LNT0080300.1	10	Qbph10	Resistance or Tolerance	Insect resistance	RM484	RM496
Osa10LNT0080300.1	10	Rf1	Physiological trait	Sterility	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus