>Osa10LNT0080400.1

AAATTAACCAAAGAGGGTGCAATTTCAGTCAGAGTAGGGAGAAGAAAAGAGTTAGTTTAGAAATGAGGAAGCAACACACTTCTTCTGCTGTTGCTGCTGTTGCTGCGTCTCTTTGCAAGGTGCTCCTGATGATCCTCGCCCTCCTCTGCACCCTGCACACTGCCTCCGTGGTCGAAGGGAGATCAGGTCCTCCGAACGGGCCGCCAGCTCCTAGTGCCAACGAAGAGCGGCACAATACACCGGCCTTTCACAACTAGCTAGCTTGATATAACAGCTGCAGACTCACCATGCATGACAACCTACATACCTGCAGCTCTCTATACCCATGACATGGCATGTAATAATATGTGTGTGTGATACTACGTATGTACTGTTTCTGTTGCCGGATCGGATGATGATCGATGTTCAACTTACTCTCCTAGCTGAGTAGTCCC

Explanation	CPC Score
noncoding (weak)	-0.760895

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0080400.1	10	22604653	A	T
Osa10LNT0080400.1	10	22604804	A	G
Osa10LNT0080400.1	10	22604794	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0080400.1	osa-miR530-3p	Translation	5.0	19.934	1	21
Osa10LNT0080400.1	osa-miR444c.2	Cleavage	2.0	15.356	1	21
Osa10LNT0080400.1	osa-miR444f	Cleavage	3.0	15.356	1	21
Osa10LNT0080400.1	osa-miR5527	Cleavage	4.5	13.828	1	21
Osa10LNT0080400.1	osa-miR444a-3p.2	Translation	4.0	15.356	1	21
Osa10LNT0080400.1	osa-miR444b.2	Cleavage	2.0	15.356	1	21
Osa10LNT0080400.1	osa-miR444b.1	Cleavage	3.5	12.232	1	21
Osa10LNT0080400.1	osa-miR444c.1	Cleavage	3.5	12.232	1	21
Osa10LNT0080400.1	osa-miR444d.2	Translation	4.0	15.356	1	21
Osa10LNT0080400.1	osa-miR444e	Translation	4.0	15.356	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0080400.1	10	Rf1	Physiological trait	Sterility	nan	nan
Osa10LNT0080400.1	10	qTGWT-10	Morphological trait	Seed	RG561	RM228
Osa10LNT0080400.1	10	nan	Morphological trait	Panicle/flower	RM171	RM333
Osa10LNT0080400.1	10	Qbph10	Resistance or Tolerance	Insect resistance	RM484	RM496

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus