>Osa10LNT0080600.1

GTTTCATGAATCTCATGATCATTCAAGTGCGTAGTAGAACATGTCATGCATCAGAGAAGGGTTTATTCAGAAAACAAAGGCATGACCTACTGGATTCTGGGGAAAAGCATGAGTACTTTCTGCTGAAATTTTTTTTACATCATCCAACTCCGATAAACATCCTGTAGGTTTAATATTGTTTTTTTATGAGTTGTCATTCTAACAACATTTATTGGGAATCACAGCCTCACAGGCCATATTTTCTTAGTCCAAAAAGAAATACATATCTGCTTCAGAGTGATCATCTACTGATTTGATCTATTATTCAGTACTTACTCAGCTGCAGTGGAAATTGTGTGGCTGTCTAATGGTACGCCATTTGGGTTTCTCATCTTGTCATTGGAAGTAAGATCAATGGTCAGATAGTCATGTCCAGTGAATTCTCTAAAATTTGCTGCTCTCTCCAGTTCCTTCACTTCTTCAATAACCATCTCCAGCCGAACTACCATTTCTACCAACAATGAAGCAAACGCAGCGAATGGAAGTGCTTCTGAGAACTCAAGGCTTGTCATGGCTATCTTACTTAGTGTTGGCCTTAATGTGCCCCGCTCATTCCGTTCTGATGGTTGGTCTGCTTTTGTATTCCTCCTTTCTAATAGGGATGTGCCATCAGTCTTGAATGATGGTAGAGTAGTTCTTGTGGCTGTATGCTTGCTAGAATTTAATTCCATCAGCACATGACTATTTGCACATGCATGTTTGGAGCCGAGAAAGAGCCGTGGCTGTGATCTTATAGCCGAGTTTAGATCCTGTAGTGCTTCATGAAGATGATCAGACAGCACATCAGGGGCACAACGATGATGATCTCTTATGCTTACTGCAAGCTCTTGTAAAACCTTGACCACTTCTCGTGCAACTCTAGTACATGGGTTTCGGAATAGTGACCTGACGGATGGTGGAGTCTGAATCTCAGATTCTAGACATCCATGAAGTGCTGCGACAGTATATGCAAAGTGCCTAAGAACAGATCCAATCTTCACATACTTTTGCCATGGATAACTGTAACATTGCATTGAATGTCTTGGCTCCCAGCTTGCATAGTGTGCCTGGTCGATTTGGTACCAATATTGAAATCAGTATGTAATCTGCACATCATCACTTTATAGAGAGAGATTGCAAGAGAAAAGGAAAAAAATGTATCATCAAAAGGATAGTTCCTTACTAGGGTTTCATCACTTGATTTTGAGTCAAGGACTGCTCTATAACCAATGTGAATGGAAGCTCTTGATGCCTGCTTATCAAGAATTTTATCATCCTTGTCTTGATCTTGGAAATACTCAGTAACACAAGCTGCAATCATTCTTTGGTAAGGTTCTTGATACTTGTTATGCACCTATGCTCTTATTATTTAAGATGCAACATATAAGTGCTCCTATCTACTATTTACCCACCTTCAATTGATCTTGCTAATCCTTCAAATTTGCGTACTGTAGAACTGTGGAGGTCTTCTCCAGACCAGTTTGGCAATACAAAAAGACTCATGAATAGGCATATTGCACAACCTATCGCAATAGTACTTAAGCGATCTCGTGCTAAAGGCACCACATCCTCTTGACGGAAGCTTGATACTGTTATCAGATTGAAAGTTAGCAGGAAAATCACGACCCCATAATCATAGTTCTTCTTAATGGATGGGAAGAATCTCAAATATGTTGCAGCAAATCCTGTCAAGGAAACAAAGCCAACACAATAAGCTATGATCTTGCAGTAAAAAAAAAAGAAAGAACTTTACAAGGTGCGTACCTATCAGAAAGACTGATGATCCAACAAACAGAGCCCGGAATACTTTTCCAGATCGTACTGCTACAAGTTCAATTATAAATGCTAGAGATCCTGCCAAGATTGTTCCTAACCCTCTATTCAGCCCTTTGCATATAGTTGCACCTGTTGTTCAGCAGTCACTTGTGAGGAACATGAATTTCGGTAATCACTTATTTGGAACAAGAAAAGCTACATCTGGGAAGAACACATATTATTATTATTATCCTGATGCTAATGGATTATGCACGTTACCTGCAGTAAATTCAAGCACAACAACAACGGTCATCACAGCCCACATTGCATTCTTTCCCACTCCCTTGAACAACGGTTCAAGTATGTACAGGAGTGAGACCAGTGTGAGTGCTGTCCCAACCTTGAGAGCATGAATAGCCCTTCTTGGATCTTCTCTTCCTATACCCCATGCATGTGCTCCCCATGAAAAAGGAATCCTGCTAATTTTCTTCACTTGCTGATGAAGAATCGACGAGCTATTCTTGTTATTGCTGGGATCTGGAGCACAAGCCATTGGTGCGGCCTGAAACTCTTGGTGGATGCTGAGGTTTCTTACAAGATGGCAATGCAAAATAGGTGGTACCAAATGCTCGAAGCAAGTGATGCTCCTCCCCACATAAGGTTATTTTATATGAGTTCTGTCCTGCAATAATAGAAGAAACCATATACGCACTTAACTTTTGTAATTCAACTATGTTGCAAAAAAGGAGCCTCGTGTGCTTTCTCGAATGTTGCTATCGTGTATAGCCTTTAAAGTGATAGATGGTCCTTTGCATGTGATAGGGAAAAAAATTGATAGCT

Explanation	CPC Score
noncoding	-1.06758

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0080600.1	10	22683433	T	C
Osa10LNT0080600.1	10	22683703	G	C
Osa10LNT0080600.1	10	22684053	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0080600.1	osa-miR5796	Cleavage	3.5	21.889	1	21
Osa10LNT0080600.1	osa-miR5800	Cleavage	5.0	19.929	1	21
Osa10LNT0080600.1	osa-miR6251	Translation	4.5	22.901	1	21
Osa10LNT0080600.1	osa-miR816	Cleavage	4.0	14.776	1	20
Osa10LNT0080600.1	osa-miR444d.3	Cleavage	5.0	10.257	1	21
Osa10LNT0080600.1	osa-miR2100-3p	Cleavage	4.5	18.094	1	22
Osa10LNT0080600.1	osa-miR2864.1	Translation	5.0	14.267	1	21
Osa10LNT0080600.1	osa-miR2922	Cleavage	0.0	13.003	1	20
Osa10LNT0080600.1	osa-miR5485	Translation	4.0	12.079	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0080600.1	10	Rf1	Physiological trait	Sterility	nan	nan
Osa10LNT0080600.1	10	qTGWT-10	Morphological trait	Seed	RG561	RM228
Osa10LNT0080600.1	10	nan	Morphological trait	Panicle/flower	RM171	RM333
Osa10LNT0080600.1	10	Qbph10	Resistance or Tolerance	Insect resistance	RM484	RM496

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa10LNT0080600.1	osa-MIR2922	100.0	140	1	140	9.78e-70	259

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus