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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0080900.1

GCCTCGCAGCTAAGGGTCAACACACTGAGAAAAAAACACACATCAAAATCCATTTCTGATCCACAAGACCACATTATAATTAAGAAAAAAAGGAAGTTACTGGAGTAATAAGCAAGGATCATTCATGCCCTCTTCTAGCATCCATATTTACAGATGAACTGAACAAAGTAGCACTAATCCTGGTACCACCAGTTAGTAGCAGCCATCACAAAACTTAAGCACCACCAGCTACTTATTATCATCACTGCTAATCCACTAGGAGTATTAGCTACAAGTCTGCTCAAAGACATCTAAAATTTGAAACATCTCAAAATGAAAAAAAAAAGACTATATAGAAGGTTGAACACAAGAGAGAGAGGGAGGGGGTGGTCACTAATTAAAGATGTATACATATCCTGTCTGTATTTTTAATGTGTTCCTAGTAATGGTAATGGAGCAATTAGCAATGGAAAAGCTAGTGCTTTTGTACCCTTCCTTTTCTTCATCTTCCTCCTTTCCTTTGTGCAAAGCTAATGGCATCCACCTCGAGAAGCACCACCAAAAGGCAACAATGGTAATGGCAATGGGCAAAGGCCGACGAGGTGGCGGCCGCTTTGCAATGCGATTCCCAATTGCGCACGCGCTGGATTCCTGCAGGTGAAGTTGCTGTTGGTTGGCAATGGCTAGTACTCGACGATGAGGCTGCCGAATGGCGCGCGGTGTGGAATGCCCTTGCGGCGCTTGGGCGGCAGGGTGGGCGGCGGCGGCGGGGTGGACGGCGTGAAGCTCCTCTTGGCAGGGGAGGTGGAGTTGTCGGAGTCGGAGGTGGAGGCCATGGCGTGGGCGTGGCGTAGTCTCTTCCTCCTGGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGTGGCGGCGTGGGGGGAGCAGCCGACGACCTTGCAGCCGAGGGAGCAGAAGCGGAAGTTGTCGAGGAGGCTGCGGCTGCAGACCTCGCAGATGTTGGCGACGGCGCCCTTGCCGGCCTTGTGCTGGGGGCGCTCGTTGAGGAACACCACGCGGGCGCTGTTGATGACGTACGTCTGCACCCCGCCGATGTCCATGAACCTCTGGATGTCCGACACCCTGATCACGTCGTGGTACGACGACCGCCGGATCTGGATGGTGTGGTGGTCGCGGTGGTTGTGGGCGAGGCAGAGGGAGCAGAGCGCGGCGGCTCGTGGTCGATGGCCATCGATCGATCAATCAATCAATCAGTCCTCTCCTCTCCGAATGCAACTAGGCAAAGGGTAGGAAGAAGAAGAAGAGAGAGCGGAGGCGGCGGTGGATGGATGGAATGGCAGAAGAAGAAGCAAAAGGAATGAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.257286
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0080900.1 10 22829270 A T
Osa10LNT0080900.1 10 22830860 T A
Osa10LNT0080900.1 10 22830879 C T
Osa10LNT0080900.1 10 22830971 A C
Osa10LNT0080900.1 10 22830801 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0080900.1 osa-miR2868 Cleavage 4.0 6.512 1 20
Osa10LNT0080900.1 osa-miR2868 Cleavage 5.0 17.399 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0080900.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0080900.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
Osa10LNT0080900.1 10 nan Resistance or Tolerance Drought tolerance RM496 RM228
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus