© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0006400.1
GCCTTAATAAATGCTTCTGGTGGTAGCAGAAATCAAACAGGTCAGGGAAGGGCTTTTGCTGTTGGGGAAAATAGGAGATTTGCGGCCCATTACAATGGGGACTAAAACTATGTGCTTATTGCACTCATTATAATCGATCTAAAGAATGACAAACACTGGTGGTACACATGGAGATTGCTTCCATAATGTTACAACTGATGATTTATATAGACAGATAAAATGCCTTGCAGCAGCAGCAACGGCGACAATGGCAACACAACATAGCAGTATCTCTACTGCATTGGAGACGAGCGAACGGAGAAGGCTGCGCCGTCGTTGAGAGGCAGCAAGCTATAATAGGCGCCATCTTTGTCGATGCAGCACGCATGCCACTTCATCTTGTATGAACCCTGAGGAAATTCAGACACATCCAGCAGGCAGCTAGAGAATCCCACCCCACTGTCACTCGCTTCGAAACGCGCAAATGCTGTCACCATATCCTTCTGCTCAACATGGACCTTCTTCCTCCTTTTCTTCTCCCTCTTCTTTCCCAAATCATCCTGTACGAACTGCATAAGCTTGGTATTAAGACCAACCATTCCAGCAGTTTTCTTGCGTATCTCAAACTGTTTGCTTCTTGTTCCTGTTACATCTAAGCAGGAGGATGCTGAGCTTGCAGCTAAAACGCAGTATAGCTTCGAGATATCAATGTCACTCCTCTCTAACACACATTTCCACTGCAAGCAAAGGGTCAGGGAAAGCTGGAAACTACTTGGTACTGATATCCCGTCTCTGTTTTCTGGATTTGAATCATATAAATGAAGTTCAGCACCAAAGCAAGGCCTTACTCTGAAGAAGTATTTGGGTAGAACAAATGGCAATTCCATAACCCTCTGCAAAATGTTGGACAGAAATTGCATCCCTTCATGCAAAGGAGATACACTGTCCTCTCCAGTCGCTATTCCTCTGGTGTCCCCACGTAAGCGAAGCAAATATGCCACAGCAAACTTGCAAAGACGATAAGAATCCTTTTCCAGAATACCTGAACAATTCATTCTTGTGACAATCTGTATGGAGTGCACTTCATCACAACAAATGGGCATTAATTGTTGCAGTTGTGAAACAATTTGGCTATCAGTCCTATCCACTCTTTCATGTAAATCTTGTACAACTGAAGCATGAGAAAACCTCTCTGGAAGCCTGCAAGGCTCCACACTACTATGTACCTTTGAGAAATCCACAGAAAATGCAATACAAAATGCCAGAAGTGAGCACATGAAAGCAAGCCTGGCTATGCTAGAAAAACTTTGGTGATCCATGTCCCCATGGGATACAGCAAGCAGATCATAACTATGTGCCAGTTCACTTAATCCTAACGAACGATTCACCAAAGCAAGTAATTGGCTGTTATTATGCTCTCTAGGTACACTTGAATGGTCTCCAATAGCATCATGATGAGATTCGTCTCTCTGATCAGTTAAATCTGCAGTAAGGATACCAAGAAAATCTGCTAGGATCTCAAGAAACGATGCCCTGAGACTAATAAACCACCTCTGGAAAAACAGCTCATGACTTGAAGAGGTGTTTGATAAGAGGGGATCAGTAGCTAAGAACGTTCTGCTGCAAATATCGGTAATCTTTGCTTGGGAACCATGCAACTCTGAAGAGTCAGCAAGACTACTGTCAACATTTGTTTCAACCCAGTAAAAGTTCTCATGAAGATCGCAATCTGTTTTAAGCTCATTGACCAACTTAATGATAGCTGAAGGGAAAAGCAGTAGCTTCATCTCAATCTCTCCAGCTGAAATAAGCAGCAATGATTTGAACCAAAAACTGAAAGAGCCTGACCCAAAATCATCTGCAAGTTTTCTGAAGACAGACGACGCCGCAAACCAGAGGCCTTCACGACAACAGTACATAGCAGATCTATAGGCATCCCAATACCTCTGGTTTCTGAAAAGCATTTTTGTTATCCGAATTGCACACAACTCCTGAGTTAACCAAACAGAAGGACTAAAGAATATGTCAGGTTGTTCTTTTGAATCCCCTGATTCTTGATTGACATCTCGAGTTTTACAAGCATACCATGAAATACAAGCACACATTACCAGATGGAAAGATTCGTATGTGCTACAATACAGAGAAGTATTCTGCTGCACACACTCAATCAGCTCCTTGATGCTATCATAAAGATTGCAGCTAGCACTAGGTGTTTTAGAAAGCATATTATGACAAGAATTTGCAAACTTGAGTGTCCAAAGAATTATATTATGCACTATAGATACTTCCTTCTTGCTACTAAATTCAGCGGGGTCGAATTTTAACTTATCAAAATCTGTTCCCATGTGAGAAGCCTTCATACTAGCAGATACTGGCTTGACAATATCATTTGAAGTGTCAAGTACTTCACGGGCAGAATTTGTTTGAAATGATTCAACATTGGCAACAGAAACTTCGGAGCAATCACTGTCATCTAGTCGGGCTAGTTCTTTTATCAGGCATCTTAGTTTATCAAGAGCAACAGCAGCAGCAGAAGGGTAGCACACAAGAAGTTTTAGCATACTGCTTAACATAGATCTGTACATCTTGAATTCAGAGGACATATAGGTATGTTTCCTTATTGTTTCCTTGTTTCCAGTGCTTATTATTTGATTGACCAGGGATATATTATGATTTACCATTGATGTTACAATCTTATGCACGAATTTGTCCTCCGCATTTTCAACTGTTGACAGGAAGTTGCTGGTAATCCCTTGACACCCATTGTATGTCAATGATGAACCTTCCTGAGTAATCATGTTCTGATGTGACCTTGTTTGCTGAAGAAAACATAAGGTGCCAGCAATAACTTTAAGAGCAGTACCTTGCATCTCCCAGGAAGAAGAATGCAAAGAACTTTCAGCAGCCAGAACAAGCTTAGATAGCTCACAAGTATTGACTAAATGAACAATTGGAGCTTTGCCACAGACTATCTTTTGAAGAACCATAAATGCATCTCTCTTACAATCAAGTGGGAAATCATCATCATCAATTAGCTGTAATAACGTCCCAAAAACAGTCTTTAAAACAGGAAAATGGCAGATGCTTCCGTGAAACATGAAACATAAACATTTCAATGACACAGTCTTCATGCAATGAGAAGATTCATGCTCCAGGAACAATAACAGCAATTCCACCTGATTGCAAAACAGAACAACTGATTTGGATGCCAATCTTGAAAGTGACAAGAGCATGTCAGCTTTGAAATTATCTTCCAACGTGCCCAGAACGATCTGCTTTCCAACCTCATGAACTCTATGGATAACAGCCAACGTACAGTCAAGCTTGGGGAAAATCTTAATCGCTGCCATGATAATTTGAGGTTGTGATGTTGGTGAAGAAATTAATCTTCGAAGTGATTCAAGTGTAATGTATGAGAAATCCACTGATAGCCTAGAAAAACAGGCAGCTGCAAACAAAGCCGCTTTGACCTGCCAGATGATAACCATAATACCATAATAATTAGGTGAGTTGAGAAATCCCAAGCCAAATTAGATGGATTATTGAGGTTATTACAACCTGTAGCGCATTGGAGGAAGAGAAGGTGGAGAGGATGAGAGAGCGGAGGTGGAGGCTGTGGTGGGCGAGGTGGGCGAGGCATCCGAACATCCGCAGCGCGAGAGCCCTGGCCCGCGGGCAGCCAGCGTCGTAGGCGGCCTTGACCCTCGCGAGCACCGCCACCTGATGTTGGGGTTCCGCCGCCACGCATGCCATGGTCATGGGCAGCGAGCCGTCGAGGCCGAGGAGGAGGAGGGCGCGGAGGATGCGGGCCCGGACGGCGTTGTCGGCGGTGGCGAAGTGGGTGGCGAGGCGGAGGAGGATGGTGTGGGCGAAGAGGCGCGGTTCGGAGGGGAGGACGCCCAAGGCGGAGGCGACCGCGGGGGGGACGGCGGCCGGCGGCGAGGCTCCGAGCTCCCGGAGACGCGGGGCGACGGCGTCGACGGCGCGGAGGCGCGTGGCGGGGTGGCGGGAGCGGAGAGCCCTGTCGAGGTCGATGCTCCATTGCATGGCGGACGACGCCGCCGGTAACTTGTCCATCGCCGCCGACGCCGACGCCGACGATGGCGGCGGAAACCTCTTTTTGTGGAGAGGCCCTTGTGTTT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0006400.1 | 1 | 4732033 | G | A |
| Osa01LNT0006400.1 | 1 | 4733363 | A | G |
| Osa01LNT0006400.1 | 1 | 4735471 | A | G |
| Osa01LNT0006400.1 | 1 | 4737232 | C | T |
| Osa01LNT0006400.1 | 1 | 4734416 | T | C |
| Osa01LNT0006400.1 | 1 | 4734914 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0006400.1 | osa-miR5536 | Cleavage | 4.5 | 12.419 | 1 | 22 |
| Osa01LNT0006400.1 | osa-miR5802 | Cleavage | 5.0 | 16.529 | 1 | 24 |
| Osa01LNT0006400.1 | osa-miR1319b | Translation | 4.5 | 16.492 | 1 | 24 |
| Osa01LNT0006400.1 | osa-miR5833 | Translation | 5.0 | 16.996 | 1 | 21 |
| Osa01LNT0006400.1 | osa-miR171i-5p | Translation | 4.5 | 12.974 | 1 | 21 |
| Osa01LNT0006400.1 | osa-miR1856 | Translation | 4.5 | 13.164 | 1 | 21 |
| Osa01LNT0006400.1 | osa-miR2866 | Translation | 4.5 | 11.026 | 1 | 20 |
| Osa01LNT0006400.1 | osa-miR2868 | Cleavage | 4.5 | 15.529 | 1 | 20 |
| Osa01LNT0006400.1 | osa-miR2877 | Cleavage | 4.5 | 6.517 | 1 | 24 |
| Osa01LNT0006400.1 | osa-miR5144-3p | Cleavage | 4.5 | 14.663 | 1 | 21 |
| Osa01LNT0006400.1 | osa-miR5338 | Cleavage | 4.0 | 12.954 | 1 | 21 |
| Osa01LNT0006400.1 | osa-miR1857-5p | Cleavage | 4.5 | 14.902 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0006400.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0006400.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006400.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006400.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0006400.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0006400.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0006400.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0006400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006400.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0006400.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)