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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0081300.1

GCTGTATAACTGTAGGGCAATAGCCAGGCCTTCTTTCACGGTCGATTCCTCCATGCTATCCACCGACAAGGAGCTTAAACACACACACACAGAGTCACACACAACTGGAGTATATAACTCGAGTAAACAGAAACTTCCAGTCCAGGGGGTAAAAAAAAAAAGGATGATCGATGCAATACAAGATCCATTCGCCTCTCGCGTCTCTGTATTAAACATGTTCATTATCCCCACATTCAACCTTGGCTTTTTGAAAACGAGGGAACAAAAAAAAAGAGGAATAAAACATTGAAGAGAAACTCTTTACCAGATTAAACAGCACAGCAGACCAGGATACATGATGTACATTTCATATACGTGACACTTATAACACGAGGCATGAGATACAACTAACAACATACTCCATGGTACCTCAAAGGCAACCAAAAGAATCACCCGGATTTTATTTGCCAATTACTTTCACTGCATTCAAATCCGAAGTAGTGCAGCAGACAGCTTACTTGATATTCTAGGCCACTATCATACATGATAAAAACACAGAAAAAAAATAGTGGCATGGTACCAAATTATCAACCAATTCTGTAGTTATTGTCCACTATGGCAACCAAACTCACACAAAGTCAATTTCAGGCTCAAGTTGAAGCATCATTCTTTTAGAGGATATGGCCAGGCACTGAACATTATCTCAAATTTGGGTGCAGGACACAACCGCAATGGATTGACACCGGGTCACAGTTCCTTGATTCCCTTCAAACAGATGCCTGGTAGAATTCTGGACTTGTAAACTTGCAGAGGCTTCCCTGGAAGACACCTAGTTCCTAGAAATTCCTCGTCTTCTTGGATGCTTGACCGAGGTCAGCCAATTTTTCCTGCTGCTTGCGTAGGTAACCACCAGACATAGAGACGAGGTTGATGCGGGAGCGGGGCGCGGCGAACATCCAGCTGTCGTCATCGAGCGACCTGACCTCCTTTTGCAGCGCCTCCATCACCTCCGACTTGAGCTCTGCCATGGCCTCATCCTTGCGGTAGAGCGCGTCGATGGAGTCGGCGACGTCGTCGGAGGCCGAGATCGCGCCCGCGCTGGCCGCCGACACGGTCGACCTCGCCGGAGAGCTCATCGGAATCACGCGATGCTTTTCCCCTTTTCTGGGTGAAATCGAATTGGAGTCAGTCTCTACTGTTTGAGAAAAGGGAGACGACGAGAAATTAATGGGCCCGCGTTATTGGGCCGGCCTGTTAACGCGAGATGGAGACGGCCCATTTAGTGTCCACTAGTTGCGTCTTCGCAGCGGAGATCGAACAGAAGCAGAAATCCCCAACCCAATCGGAGGAGGAAGAGAAGGGCGGCGGCGGCGAGCGGAGATGGTGAGGAAGGCGAAGGTCGAGTTCGACGAGAGCCCGCCGGATGACTTCGACCCGAAGAACCCGTACGGGGACCCGGTGGCGATGCTGGAGTACAGGGAGCACCTGGTGAGGGAGAAGTGGATCCAGATCGAGACC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.334772
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0081300.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
Osa10LNT0081300.1 10 nan Resistance or Tolerance Drought tolerance RM496 RM228
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus