\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0081400.1

AATTAATTAGCAGAGTGAATTTATTATGAGGTGTTACATAAAGAAGCAACAAGTCTGGTTATCCATGTGCAAAGTGTGGTACGGTGTGGATGAATCATCCAGCCGTCCGTCCGCACTTGAACTGAGCTGCTCTGCTCTGCTCGGCGGCCTGATTTGCATCTTCCAAATTGCTCGATCTGCTCGCCGCCGCGCGCCCTGGCTTGCACTGCAGTTGAATTGATCTCTGGTGTTCATCAGTGTGTGTATTGACGATGGATGTAGCCAACGATCCATCATCAAGAAGGCGCTAGCTACAGGATGGATCGTGTCTCGATCTGCCTTTGACAAAAGCAAGCTCTCATATGTACACAAGCAAAGGCAAACGCCGGGTTGGGTTAGCAGGACGCCGGCACCAGCGGCGGTTTCATCTCATCCTCTGCTTCGTCGTCTTCATCCTCTTCCGCGTCCCACAGGAAACTCGCGTACGATCCAAGCACGTAGCAGTCATCGGGCGCGGCCTGGACGGCGCGCTCCAGGTAGGCGGCGGCGCGGTCCTTGTCCTGACTCGTCTCCCACAGCAGCTGGCCGTAGAGGCTGAGCAGGTCGCCGTCGTCGGGGGAGGCCAGCAGCGCCCTGGCGTAGCACTCCTCCGCGCCGCCCAGGTCGCCCTCCACCTCCTGCAGGTACCTCCCGTAGTTGCGCAGCACCAGCGGGTTCTCCGGCTCCACCCTCAGAACCCGCCGGTAGTACTCCCCCATGTCCATGTGCCCGCCGCCGCCTCCGCCGCGCCCGGACGTCTTGTCGTCGTCGTCGTTGCCCTTGCCGCGCCCGGCGCCGTCCACCACCACGACCACGTCCTCCTCCAGGATGTCGCGGAGGAGGAGGGGCAGCGGCGATGATGCCGTCGCGGGCGCGGATCTGGCGATGTCGGCGTCGGAGGTGGCGCGGCGGAGGCTCTGCTGCTGCTGCTGATGATGATGATGCATGCTGCGCGGGGAGACGCACAAGGCTGTGGGGGAGCGGCGGAGGCGTGGGGAGAGGGAGGCGGAGCGCGTCAGCCGTGTGCCGGTGGCTTCCATGGATGGATTTGGATCTACTTACTTGTCGATCGCTGAGGCTGAGCTTGAGCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.725139
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0081400.1 10 22965419 C A
Osa10LNT0081400.1 10 22964306 C T
Osa10LNT0081400.1 10 22964493 A C
Osa10LNT0081400.1 10 22964759 A C
Osa10LNT0081400.1 10 22965416 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0081400.1 osa-miR5526 Translation 4.5 20.155 1 21
Osa10LNT0081400.1 osa-miR820a Translation 5.0 14.146 1 21
Osa10LNT0081400.1 osa-miR820b Translation 5.0 14.146 1 21
Osa10LNT0081400.1 osa-miR820c Translation 5.0 14.146 1 21
Osa10LNT0081400.1 osa-miR2103 Cleavage 5.0 23.902 1 22
Osa10LNT0081400.1 osa-miR5514 Cleavage 4.5 24.385 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus