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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0081500.1

CAGATGCAGATACATGGGTGGTGGTCCGTCTCCCTCCACTCCTGTCCTCCTGCAGCCTGCGCCCATCTCCGGGGCAGCGACCAATTCACCTCACAGTAGCTACAACCCTAGCGTCAAATGTTACCCGGCTGTGGCCTTCACGGGAGCTTTGTGCTGCGCTGCGGCGAGCGATGTGCACTACATCTCTCTCCACCTTGGGCTCAGAATTGGCAAGAACCCGGAGGGCGAGAGCAGCCCTGACGGCGACTGCGGGAACCAGAGGCCAGGCGACGGCGGAGCCATGGGCCCTGGACCCAGGATCCCAGTGCCCGGCAGCGGCGACAGCGCGGGGAAGTTGGGCGTGAGTGGCCCCGGGTGCTGGAAGCCCGGCGATAGCAGCGGGTAGGGCGACCTGGGCGTGGGCGAGAGCAGGTTGAGAAAGCCGCTCGGCGAGGGGAGTATCCCTGGCGACGGCACCGGCGGCGGGGGTGGGGGATGAGGGTGGTGCGGAGGGGCCTGTTGTCCCGTAGCAGCAGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGCCTGGCGGGGTGGCGCTGAAGAGGGAGTTCTCGAGGATGCGCATGTAGGCGGTGACCGGTGAGTCAGCCCAGACGGGGGGACCAGGCATAGGCATGGGCATGGGCTGCGGCGGCGGTGGGCGGTGGAAGGCGGGGTTGTGGTTAGGGTTGGGGATCTGGTGGTTGTGGACGGGAGGGGGCCGCGCGACGGGGGTGGAGATGGGAGGCGGGCGGATCTTCTGAAGGCGCATGGATGGGGGCTTGGGCTGCTGGTGCTGCGGCGGCAGCGGGCGGTGCGGGTGGTGCTGGTGCTGTGGCTGCGGCGGCGAGGCGGGGAGGGGGTCCCCGCGGTGAGCTGCTGGACTATGTCGCGGAACTGGTTCTTGCTGATGTTGTAGACCTGCGGCTGCGGCTGCGGCGGGCGTGACGGCGGCTGCGGCTGCGGCGGCGGTGGCGTGGCCTTGCGGATGTTGCGGCCGAGCTTGTTGACCCCGAGATGCGGGTTGCTGTTGCTGCTGCTGCTGCTGCTGCGATCCATGGCGGTGGACGGGGGACGGAATCGGCGGCGGGGAGCAGCAGGGCGGGGCGATTGGGCGCGGCGGCGAAGCTAATCTCAGGCCGGGGAGGAAGGGGAGGGCATGGAGGCGGCGGATTGGTGGGGTTGGCGTCGAGGGCGGAGCTAGAGGAAGCCGGGATGCACAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.84643
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0081500.1 10 22995650 G A
Osa10LNT0081500.1 10 22995080 A G
Osa10LNT0081500.1 10 22995187 G A
Osa10LNT0081500.1 10 22995811 T A
Osa10LNT0081500.1 10 22995957 C G
Osa10LNT0081500.1 10 22996061 A G
Osa10LNT0081500.1 10 22996809 G A
Osa10LNT0081500.1 10 22997779 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0081500.1 osa-miR168a-3p Cleavage 5.0 17.504 1 24
Osa10LNT0081500.1 osa-miR1425-3p Cleavage 4.5 18.04 1 21
Osa10LNT0081500.1 osa-miR5074 Translation 4.5 16.385 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus