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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0081600.1

GGCGAAACAATAACATTAATCAATATGTATATAACATTACATGTTTTTATGCAAAGAGAAGAAAAAGAAACAGGAGGGTAAACAAGGAACTTTTATCAATTTTATGTGTAACCTCAGGTCCACGAGTAAAGCTGAAATCATCATTTCGCATCGGAAACCGATGACAGAAATCTTGACAACATGAATCCTAGGACCGAAAAGACAAACCCGCATCATATACAGACGCAGACAACTTATGTGAGATAAGCTTCTCTCCACTAGTCAAGTCGGCCAGTTGCTTCTCTCACCATCCGCACCGACGACTTCATGGTTTAGCCATCATCTTGGCCCACGTGTTTGGGTGCTTCATGCCTCGACATAGGGGGCAACTTATCTTGGAGTCGCATTATTGTTGATATAAGCATTCTGTCACCAACTATATGCCTTAACTTCTTCACTAGGTCGACTCGGCTTATTTTCTTGCTCTTGAATTCTTCGTAACAACTGTTGACCATGTCCATATTCTCAGCAGAAACTTTGGTTGAAATCGCTGCAAATAACATGGAGAAAGGCATCCAAGGCGTGCTTGGAGCCCTTTCCACTTTATCTCCTAACATGGGGGCTTCATAATGACCTCCCAATGCTGGAGAAGCCTGAAGGTTCATGTCCTGTGATACACTATCAGGCGAACCAGAGCTCAAGATCAGTGATGAAACCTCTGATAAATTGTGACAATCTTCTTCGGTGGCAGGAGAATCTTTGACTCTAGAAGGCAATTTGATGGTGACTACAAATTCAGAATAGATGTGACTATTCACATTCATATCCCACACAATGTAATGTTGAGGGTTTTTAATGTCATCTACACCACTATCGAAATACTCGTTACTAGGCCGATGCTGCTTAGATCCATGGTGAACTATTTCTACGTTCCCCATTACAACACGGCACAACATCATATGGACAATGCCATTTTCATCAACATCAGAGTAATTCACACAGGTATTGGAGCAATTTGCTGGAGCAAGGATTGTGCCAATTCCGTAGTCTGGGCACTTAACAGTCTTCTCAAAGTGCATGACACCATTCAACATCATTTCATCCACAGCATCTTTTGAGCAAGCAAGCCAGGCATAGCGGACATTTGCATTGCCACGCTTACATTTAGTATGCTCTGCCTGCTTTTTGAAAAGATTATAACGAAATTCTTTATGGTTATCTACTGCTGGTGTTCTGTAGATCCCAACGATGTCCTTGGAACCAAGAACAGTGCCCAGACCCTGCAGCAACAATTTCTGAACAGCAGAAATAGCTAGTTGAACACGTGAATGGTCACCCAGCTTATCTTGTGGTAGAGATCTGCAGGGAATAGGCAGCAAGGCGTGTGGCTCATTCTCTCCAATAGTTTCTTTGACACCACCAGTTTTGTTTCCTGCGACACTCCTCTCAGCCTTGGCTCTCTTAGGGCTGGAAACATCATCAGTGCTAGATTCAAAATTCGAGCTTTCTGCTGAACTTTCTGATGTTCCAAAGTGGTCGTTCATTTCTTGTGTCCCATTGGGCTCGACAATTATGTATACATTATTACCATTTCCCAATTCCTTTTTCCTATACAGTGTCTTATCTTCAATAAAAAATTCTGGGAAGTACTGCTTCCCATTCTCATCAATCCAAGCTATTGGCCTCTGAAGGCCTGTCTTTGAGTCTATGAATGTCATGTGCACAAAATCCAGCAAAAAAAGATGGGTCTGGTGTTCACCTTCTGTGATTGTCTTCTTAGTCCTAAAATCACTGTGGGCAAGCTTGACAATTTGCTTTGGAAAGTCTTTCCATTCACCACCTTGACGAAGCAGAATTCGCTTAGGTAAAGCACTAGTCATGAAATTCTGATAACTCTGTATAATCTGCATTTTGAAATGGCACTTGATCTTTGCCTTGTGACCTTCATCAACATAAAACCTAACAACAGAGTTATCGGCGGGATGCTTATGCAATTTAGAGGTGTTGCCGGCATCAGCGCAACGTGCAGCTGGGTTGTCCCGCTTTCTCTTGAGGCTACTTATGTTTCTTCCACATTTATCCAATACCTTTTCGTTCATCGCAGCCATGGTTGCTAGTCAAGTTCATTATCGACGAGGCAAAAACCAAAAAGAGTCGGGTCAGAAAGAGGCAGAAGCGAAATGATCCTATAGTTAGCAGCAGCAGCGTGAGTAGATACAAAGATGATAGACGATATGGATTGCTTCATCTTCCTCGATCTATAATCCCAAACCCCCAAACCTACCGCTCCCTTAACGACCCCACTTTATCCCCGGCAACGATTGCCGAGGAGAGGCGGTGCCCGCCGGTGGTTCCTTCGCCGGCAAGTCTGGTCAGAGCAAAAAAAAAAAAAAACCTAACTCAAATCACGGCGGCGTGAGGCGGCGGCGAAGGCAACGAGCGGGAGGCGGGGAGGAAGGAAGGA

Coding Potentia
Explanation CPC Score
noncoding -1.01413
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0081600.1 10 23035669 T C
Osa10LNT0081600.1 10 23036282 T C
Osa10LNT0081600.1 10 23036407 C A
Osa10LNT0081600.1 10 23038810 T G
Osa10LNT0081600.1 10 23038819 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0081600.1 osa-miR5797 Cleavage 5.0 19.194 1 21
Osa10LNT0081600.1 osa-miR5830 Cleavage 3.5 13.106 1 24
Osa10LNT0081600.1 osa-miR169d Cleavage 5.0 10.124 1 21
Osa10LNT0081600.1 osa-miR408-5p Cleavage 4.0 18.462 1 21
Osa10LNT0081600.1 osa-miR5074 Translation 4.5 17.724 1 21
Osa10LNT0081600.1 osa-miR5144-5p Cleavage 4.0 16.573 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus