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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0081700.1

GCCAAACAAGGGTAAACTGGCTGTGAGTACCTGGTAGCAGCCAACATAGAGTAGAAGTGCTATTACAGCCACATAAGGAGCATCCTTCAATAAGGTGTAGTACGAAGATAACAAAAACAAGGAAACAGCAATCCCACTAACACCTCCAATCAGTAATGGTCTTCTCCCAAGTCTGTCAACCACAAGAACTGCCACACCAGTCATAATCAACTACAAAAGAAACACAACATCAGTTGAAATGATGCAGAGAGTATTTATTTGTTGCAACTTGTCTTCCCAAAATTAGTCACAAGAGTTATTTGTTGTAGATGTTCATGTTTCTTTATTTCTTGCACCAAAACCAACTGTATCTGCAATAATGTTGATTTGTTGCACTGAATTGATGCAGCTAGGACATGTAGCTCACTAGCTCACTGTTTTGTTAAATTGGTATTTGTGGCAGTAGGTCTATCGATTTGTTGCGCGAAACTTCATAGTTTTTACAATTAGTAATTGCTCATTGTTGCATCATGAGCCCTTGCATGTTGCATGGTGGTGTTAGTATTTTTGTGACAAAGGATGTTGTTTTTTCTCTGGCTTACATGGTGATGATATTCTCTCTCTTTTTTTTTGCTGGGATGGTAAGATATTCTAGTGGAGACTCAAAACACTTGAAACAAACAAGCTTCACTTTTATGGATGCACAAATTAATTTTAGATGAAGAGGAGAGGAGATGCAGCACATAAAAAGGAAAAGGGGATCCTCCCAAGATGGTCATGTCATCAGGTATTTGGTGCTGCCGTCTCAATGCCTGAGTGCTAGCTGTGTCCTTTTTTTCGTTAGTGTTGTCGTATCGAATAATATCAAGACAAATAGTGGTACAGGTTATTGCTCTTATGGGTGTATCAGTTTGTACTATTGTAGTAATTTGTTGCTAGTTCATGTTCATTCATAGGGGAATGGCAAATATGGAACAGCTTAAAGTTTGAAAATATCAGCGTGTGTTATATGTGAACTAATATTAAGAAGTACTATATACCTTCAGTAAGCCAAGAAGAACTGATACACGAGTAGCATCAGATGCACCAGAGAATCCAGCACTCTGAAGGATTGTCGCAGCATAATATAGCACACTTGGTTGACCAACCACCTGCTGAAAGAACACCAAGCCACATCCGATTATCATTGCTTTGAGGCATTTTCCCTGAAAGATCTCACTGAAGCCTGCTTGCCTCTCTTGATCAACGTATGACAGTTCATCCAGAATCAAATCAACTTGTTCCGAAACCAAATCAGGAGAAGCTTGACCCCTCAATCGACATAAGCAACGGGTAGCATTTTCTTTTGACTCCATAATATTCCTCTTCCCTTGTATGGCACATAACAGAAGCCACCTAGGTGAAGCAGGTAACCAGCACATCCCAATTCCCATGATGAGACATAATGGTGTACTGGTGGCATACATGTAGCGCCAACCAGAAACCACTTCGACAAAGAGACTGCCTGCAATGTAGCCAAGAAGCATCCCAAGAACAATAAAGAATTCCTTGAGAGAAATGAGCATGCCTCTTATCTGACTTGGAGCAGTCTCTGCAATGTACATTGGAGCAGCATGCATAGCCAATCCTATTCCTATGCCATAGAAAAAGCGGCCAACCACCATGATAGGGAAGTTAGGTGCTGCTGCTGTGAGAAGAGCTCCAATCAAATATGAGACAGAAGAAAGAATAAGCTCTCTGCGC

Coding Potentia
Explanation CPC Score
noncoding -1.02989
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0081700.1 10 23098083 T C
Osa10LNT0081700.1 10 23097419 G A
Osa10LNT0081700.1 10 23097938 T C
Osa10LNT0081700.1 10 23097949 C T
Osa10LNT0081700.1 10 23097107 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0081700.1 osa-miR156k Cleavage 4.5 16.935 1 21
Osa10LNT0081700.1 osa-miR156l-5p Cleavage 5.0 16.935 1 21
Osa10LNT0081700.1 osa-miR529a Cleavage 4.0 17.229 1 20
Osa10LNT0081700.1 osa-miR529b Cleavage 5.0 17.595 1 21
Osa10LNT0081700.1 osa-miR5081 Cleavage 4.5 12.662 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus