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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0082000.1

CGGTATGAAACTTTTCTCCTCCTTGTAACACTTCATTCACATCAATCAATATACAGTATATAAAACACATAATTGTAATTTCTAATCATAGTAATATATATACATGCATATATTATTGACGCCCGAGGTAAAAGCAGATCTCCACGGAGGAGTTGGTCAACCGAATGTCTTCTCGCTGCTGTAGCACAAGTAGAGGAAGCCATCGCCCTCATCTTTGTATGACTCATACACACTGCCCATCAGCTGAGCAGTCTGGGGCAAAGTGTTGTTGACAAACACAAACAACGCTGTCCCTGGAGACAAATGTAGCCTGGAACGAAGTATGAAAATAAACTGCCCAACTGGCATGTTACATGGAACCAGGTACTTGCGCTTCTCCATTTCTGGAAGATTACTCCTCGAAAATTTCTCAACAATGACAGGGATCCTGTCGGGGTAGGAGGCGATCATGGCGGCCGACTCCTTGGCCCTCTCCTCCAAGGTGAACTCCTCCTTGAAGGGCCTGGGCTTCATCTCTATCTCTAATTCAAATGAGCCTCTCTCGTCTTCTTCCTTGATGCGAATCTCTCTGTAGCTAGGGTTCGCTGGTTGCTTGCGTGCTGGTTTGGCTTTGGATTGAACAATTCGGTGGATAGACGTGTAGACTCCAGAAGAAGAGGAAAGGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.932033
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0082000.1 11 1694 A G
Osa11LNT0082000.1 11 2245 C T
Osa11LNT0082000.1 11 2587 A G
Osa11LNT0082000.1 11 2680 G A
Osa11LNT0082000.1 11 3740 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0082000.1 osa-miR1870-3p Cleavage 4.5 19.385 1 24
Osa11LNT0082000.1 osa-miR2094-5p Translation 5.0 24.029 1 21
Osa11LNT0082000.1 osa-miR5083 Cleavage 5.0 11.499 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus