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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0082300.1

ATGCAAATAAACTCCATTGTGAGTGATTCAGTATGGAAAAATTAAGGTGCAGAGCTTAATTCGGATCATAATTGTCTGCTCAATGGCGCATACAAACTCCAGACATTGAATTGCCTGGCGAACTCCAAAGGGTTACACGGTATAACTTGGACACTTTCAGAACTAGTCAAAACTGAACGACCCGCTAGCTACAACAACAATTGGACAATGCTTGTTTAGTGATCTGAATATGGTGATCCAACAGATCAATGAATCCCTGTGTTCTGCAGGGCCGCATGCTTTTGAGCAGGTAAGTAGCCCTTGCTGCTTATTATTTCTCTTTCTTTCAGCAGTTCATGCTATGATGGATATGCTATCTATCAGGAAAATAATCCATTCTTCGCTTACTAAGCTACTAGTACACGGTGACTCCAATAATTTTCAAGTTAATTTTTCACTTGTGCTTAGCATCTTCGGCCCAGTCAGTGCCGTTCAAGCTGTGATCTGTTTGGTAGTAAACAACATCCCCGACGTCGCTGACAAAGTGATCAACTCTCAAGCTCCTCAGCAGAACGCCAAACAGGTGAAGTGGCAGCGGACCTGACTTCTCTGGCTCCCTGTAGTATCTACCCAGCACTGGTCTTGCTGCCTTTGTTGCTTCTACGAGGTGATAATGAGGAATTTGGGGGAAAAGGTGGTGGATGACATGGGTGCCAATGTCATGGTGGATGTTGTTGATCCACCCGTAGTCCCGATCCACCGTTGTCAGGCCACCGCGGAGGTAGCTCCATTCCTCTCCACGATACCAGGGAAGGTCATTGTGACCGTGGTGGTGCAGATAAGTCACCAAATCAAGCCACATCACGAATACAAGATATGGGACACCGTATAGCATGAGCACCGGAACAGGGCCAAACACGCACGCCAAGGCGACGAGCAACGAAATCATGATGCACCAGCAGGTGGTGGAGACAATCACGTCACTCTTTTCCTTGGGGCTGAACAGATCGCTGCTCGGCAGAAAGTGAGATCCGGTCTTGCCCGGACTTCTGTACCAGAGGTAGACAGGGAAGGCAAGCAATGTAAATGGTAATGTAAAGCGCAGTTTCTTGGTGCGTGTCTCCAGCTGCCAGTACAATTTCTCGGTGATCTGCTCAAACAAATTGCAAAAACATATATAAAAATATAAGCAGATCATAGAGTACGTATCTATATGTTGAGAGCCAGCTTATATACAGGTGACAAGCAAAACAAAACTCATTCAGCCTCTCGTTATTCAGTCAATAAAGCTGAGCAGATGCTTATGCTACCCGGGCGGCCTTATTCAAATGAACCTACAACTTAATTAGCATATATATGTTATGAATCAAATCACGTGATGTGTAATATGATATTCGATCTGACGCTGAGCTACGAATCAAAAAGTGATCCGAATCGCATCTGGGATCCCTGGTGAATAATTTAGCAGCAAAGGCACGTGAGCCAGATCTACTGTCTCAATCTTGTTGGTATTATTACCATTCACGGACCACAAAGGCTAGCTGATATTTTGCAACAAGCAGGGTGGATCGTTGTGGTCTGCTGCAGTGGTCATGTGCCCTTCTCCATCTGTATTATTATTATTAATGCAATTGCAGGTGAGCATGTCGCATAATACTTACTGTTCGTTTGGCTGTCCTGTCCTTTCCCGTCCTGCCAAACGCCCCAGTTGGACACGCTAGCGAAGAATACGGAGTATATTTGCGAAAGTCATATATATGATAGTACTAGTAGTACCGCGAATTAAGCAAATGTAATTGGTGTATCTTTTTCAAAAGGGTTGTAATTGTTGTACGGGCGATGGATTGAGACAAGCATAATTAAGGATAGTACTAGGAGTGGAATTAAGTTGAGAAGTGCAAGCAATTGTAGGATGGGCGAGAGATGAGAAGAAATTAAGAGAGGAGGTGATCAGAAGGAGTGACAAACCGGGTGCCAGGACTCGTCCCTCTCGATATGACCGTGGTTCTGATGGTGTGTTCTGTGGCTGATCCTCCATCCATGGTAGGGGACGAGGATGAAGGAGTGCAGGAGGTGGCCGACGACGTTGTTGAGCATGGCGCTGTCGGAGAAGCTCCCGTGCCCACTGTGTTTGCATGCAGTCGTGGCCGAGGACGAAGAGCGCCCAGAACATGGTGCCCTGCGCCGCCCAGTAGAGCGGCCATGCCCACGCCCATGCGAGATCGATGGAGGAAGCGGCTGCGGCGAAGAGGGCGGCGACGATGAGGAGGTCGCGGGCGACGTAGGAGAGGGAGCGGAGGGGGGTCTTGCGCCAGCAGTGGGCGGGGATGGCGGCGCGGACGTCGCCGATGCGGAAGGGCGGGGGCTTGGCGGCGTCGAAGAAGAGACGGGCGTCCTCGGAAGCCTTGCAGTCGGCCTCCTGGGTCGCCGACGCCGCCATTGCCGCCGCCGTGTCGTGGTGGATCTGATTCCGATTTGTGATTTGTGAAGCTTTGGCAGCGAGGCGAGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.833352
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0082300.1 11 202282 G T
Osa11LNT0082300.1 11 200329 C T
Osa11LNT0082300.1 11 200602 A G
Osa11LNT0082300.1 11 200786 A G
Osa11LNT0082300.1 11 202473 T C
Osa11LNT0082300.1 11 203647 C G
Osa11LNT0082300.1 11 200129 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0082300.1 osa-miR5826 Translation 4.5 24.435 1 24
Osa11LNT0082300.1 osa-miR6245 Cleavage 5.0 17.811 1 21
Osa11LNT0082300.1 osa-miR7694-3p Translation 4.5 18.178 1 22
Osa11LNT0082300.1 osa-miR810b.2 Translation 5.0 12.703 1 21
Osa11LNT0082300.1 osa-miR1870-5p Translation 5.0 14.572 1 24
Osa11LNT0082300.1 osa-miR2094-5p Cleavage 4.0 24.812 1 21
Osa11LNT0082300.1 osa-miR5543 Translation 5.0 17.925 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus