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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0082700.2

CAAACAGGGCATATGCCATATCTAATTCAGTCGTACGGTATCATCATGCATCAATTATCAATATGATGGTATCGTATCAAGTTTCGGGGATGGTAACAAACCACCCATCTGAACGAGCTCTATCAAGATGGTAGCAAAATAAAATCAGTAATGTGGCTTAAACCCCCACTTAGTTTACAGGCACCGGTGCAACTTATACATCGTCTCTCTGAAAAGACCAAATCCAACGCCATGTCAACGGAGTGACAGCCCCTACTTCACCGGAAGTAGATTGATACCAGTGGGATGTCAACGTCGTTGTCATCATCGTCCTCACAAGCCACCACCACGTCAAGATGGCGCCGGTATGGGGGCACCTCCACCTTTGCCACCTCCCTCGCCACATCGACCACCTTCTTGTCTAGACGCTCCTTGTGCCTCGGGAACATTGAGTTGTACAGCAGCGAGGTGCCGCAAGATATGCTGTATGCATTCAGGCCCTTCTCCTTGAGCCAGTCCAGAAGCTCCCTCAGCGTGATGTTGCCAGTTATGGTCCAGCGGTCCCAAACAGTCCAGGCCATGTCCTGGTGCTTGATGGTCTTGGGAGGGACCGGCTCAGCCATAGAGAAGAGGGGGATTGCAAGGTTTGCAAATGTGTTCCTGTAGTCTTCAACCTTGTGCCCACCACCGAGTACCTTGTACAGTTCCAAGCAGACAAGACCAGTAGCCATCGCAGTTGAGGTGGCAATGGCAGGGATGATCCTGCCAGCTATGAACTTCGCCTTCAGCTTGTCCACTTCAGGAATGCTATAGTTCCTTGCCCGCATGTTAGCAAAACCAGCTATCACGTCCATATGGTAATTGGTGTCATCATCCTTCTCAAACTGGATTGGTTTCATCTGGAATCCTGGTTGCAGTGTTTTGGAAATTGCTTCTAACTTTGCAATAAGCTCTTCAATGACAGCAGCATCATCAACAGATGCAGACGAAAGACTAGTAGCCTTCTCATCTGTAACTATCTTAACCCCCTGTTTTGGTTGGAAATCAGGAACAATCACCTTGTCAACAGCTTCAGCCATCTTTGCTGGGTTTTTGACCCAGTCAGGTATGGGTATCCCAAATGTCTCTGCCCTTAAAATTGCAGCAGCCAAAATAAAGTTAAGCTGGCTTGGATCAGATGTCAAGAACTCCAGTGGTCGTGGGAAACGCTTTGGAGCAGACCAGAAAGGAGCACCAGAGCTGGTCATCGCATCTTCAGGGAAAGTGTATGTCAGTTGCTTCACACGGTTGGAGAAATAATCCTCAAACTTGAGCCGGGCCCAGGTAATACAATCTTGGAATGTCTCACACTTCTCTCTCTCGAGACATTCAATAACGCGCTCAAGCTGATCCCTAGCCTGTGCATCACCAGCAGTTCTTGCTACAGTTGCATATCCACCAGGATTCGATAGGAAGGCATTTACTTCAGTGGGGGTCTTCTCAAGCAAACCCTCAAACTCAGACCTAGCCCAGGTTAGGCAATGATCAATATTATGAGGAAATGAATGTACAGTACACATCGGCGCCTGCTTTTCAGGTGGATCTCTGGATGCGCCATAGTTCTCTGTTAGGTGAGGTATGACCATCTGTGTGTTACATTTAGCACCCAGAGTCCCAGATTCCAAGAGTGGCTTCTGGAAATATACACATCGGGAGTCAATATACATTCTTGCGGTAACATTGTCCAACGCATTGACAACAGCATCCAGGCTCTCCCAAAAGGCATCGTTGAACACATTTTCAGTCTCAGGACTTGCTCTGTTCTGAAGGGCCTCGACATGAAGCTTAGGATTAATTGCCATAGCAGCAGTAGCAGCAACCGTGGACTTGGGCTGACCAATGTTCCAGTCACGGAAGAGAAACTGGCGACTGAGATTGCTTTTTTCAATAACATCATCATCTGTCACTATCAGCTTTCCATTCTGATTGCAAGAAATGCCCATTAGCGCTAGGTTTTTCAAGAACTCACATCCAAGCGCCCCAGAACCAACCATAAATATTTTCGCCTGCTCAAGTTTCTTTTGAAGGTTAGATCCAAAAACACTGATTTGTGCATCATATCTAGTATTCTCTGGCTTCAACTCGGCTGGCTCCAATGGTTCAACAGGGAGAGATTCAACAGAATCAAAATAGAAGAACTGGTAAAGTGGATGGAATTTCCCTGAGCATGCTTTCACAACCTCTTGACCTACAATGCCACCAAACATTGCAGCCATAGGGTTCAGAACAGCCCTGGAACCACTTGCAAAATGATGCAGGAGCTTTTTGTCGAGCTCTTCAAGTTTGCTATCACCCAGGGACTCGTTAATGCTAATAGCAAAATCTATCAGTCTTTGCACATCATCACTAGACCCAGCAATAGGGAATCGCCTCAAATCATTCCTAAACTTATCCAAAGCTTGGAAAGCCAAATGCAGAAGTGGTGGACGGTCGAATTTGGAGAAATCGCTCATGAGAAATTCTCCTGGTTCCTTAATGGCGTCTTTCAAGGTTTTGAATTTAAGAACCTTTGGTGGCTTGACCTGAGTAACAATACCACCTCTAACATATGTCCCATATGAGGTAGTGTCTTCTTCTAGAGTAAAAGAATAAGGCCTAGCGTTCTTAATCTTTCTTGGTTTCCCATCATTTAGTTCACTCATTCCATGGACTTCTGAGAACACAACTAAATCACCATCCTGGAACTCCAGACGCTCATCATCAACACAGGAAACAAGCGCAGGGTTGTCATTGCTGATCGATGCTACTATTCCTGTATGTGGCTCCTCTCCATCAACATCCAATACAGTAAACTCAGGACCAAAGTCACAAAAGACACTGCCAAAAAGGCCACGAATTTCTGACTTAATGAAAGCAATTGGTGGCTGATGGTTGTGGCAGTAACTGTCAAACTCAACTGCTTTCTCTAAGCTGATATCAGTAAAGACCACAGCCTGGAAATTAGAAAGCTGCTCCTTAGTCAAATCACCGGTTATAGTAGAGATAATAACAGCATTATTGAGCTCCTGTAGCTTCTGAACACAAGTTTGAGCACGGTTTTGACCAACATCCTTCTCTGTGAGGAAGAAGTTGCTTGATAAGTCCCATAGCTCCACATTGTCATCATCGTGCAAGTTTACGGACTTGACACCCGCAAGGACAAGGTTCTTGGCGATCTCGGCGCCGAGGCCGTTGAGGCCAGAGACGAGGACGTTGGAGGCGAAGAGGCGCTTCATGGTCTCGCGGCCATAGACGGCGAGCTGGCGGCTGTGGAGGTCCTCATCGATCTCGGGCGCTCTGCCGGTGGTCATGGTGTGGTTGTCGTCGGCGGGTTCGTCGTCGGCGCGGGTCTTCTTGTGCAAGTCGTGGACCTCGCCGGCGAGCTCCTCCCGCTTGCGGGTAAGCATATAGTGTAGGGCGCCGCCGAGGAGGCCGACAGCGAGGGTCGCCGCGAGGACGAGGCTGAAGGCAGCCGGCGAGAGCTGCCGCGTCAGATCCAGGTCGCAACCACGGCGAGACCTACCTTGGATTCGTCTCGTTCGTGGATCGAGCTGTTCTTCCTTCGCTTCCCTTGTACTATACTCTATATCTAGGGTTTTGAGGAGGAAAAAAGAAGAAGAAGAAGAAGAAGGGCTAATTTGTAAATTGTGGCCGCTTCTCTTGTGCGTCTGATA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.774954
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0082700.2 11 300774 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0082700.2 osa-miR5525 Translation 5.0 19.415 1 22
Osa11LNT0082700.2 osa-miR5532 Cleavage 5.0 16.392 1 22
Osa11LNT0082700.2 osa-miR5532 Translation 5.0 23.245 1 22
Osa11LNT0082700.2 osa-miR160a-3p Cleavage 5.0 17.674 1 21
Osa11LNT0082700.2 osa-miR160b-3p Cleavage 5.0 17.674 1 21
Osa11LNT0082700.2 osa-miR166c-5p Translation 5.0 22.222 1 20
Osa11LNT0082700.2 osa-miR166d-5p Translation 5.0 22.222 1 21
Osa11LNT0082700.2 osa-miR166k-5p Translation 5.0 14.881 1 21
Osa11LNT0082700.2 osa-miR166h-5p Translation 4.0 22.222 1 21
Osa11LNT0082700.2 osa-miR390-5p Translation 5.0 19.428 1 21
Osa11LNT0082700.2 osa-miR444a-3p.2 Cleavage 4.0 24.843 1 21
Osa11LNT0082700.2 osa-miR1423-5p Translation 5.0 18.269 1 24
Osa11LNT0082700.2 osa-miR444d.2 Cleavage 4.0 24.843 1 21
Osa11LNT0082700.2 osa-miR444e Cleavage 4.0 24.843 1 21
Osa11LNT0082700.2 osa-miR1438 Cleavage 5.0 13.947 1 22
Osa11LNT0082700.2 osa-miR1439 Cleavage 4.0 18.407 1 21
Osa11LNT0082700.2 osa-miR1879 Cleavage 4.5 15.154 1 24
Osa11LNT0082700.2 osa-miR2866 Cleavage 4.5 21.26 1 20
Osa11LNT0082700.2 osa-miR5149 Translation 4.0 15.879 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus