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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0082800.1

TTCTGCCTTAAACATGTATCTGGATTAATTGATTACTTCAATCAACTCAACGTATATTTTGGGATGGAGGGAATAACAAACAACTCCTAACCAACAACACCCGCATATGCCATCATCAACCACGATCAAAAGTGTTTATTTAATTGATTCTTTCTCATCTCCCTTTTAATTTTCATAAATGTTAGCTGCTTGCGCCTATTTCAAAAGATGAAGAGCCAAAAATAAAAATCCCACACACGATCGAAGAAGAAACAAACAAATGGTTCTCAAGTCTCAGCTTAAAATGGTCCAGAAAAGTATAAATAGCTAAAACTCCATCGGTAAGTTCACGCTTCACTCATGAAAAACTCACGAACAAACTAACGCTACGGCACTATGTAAAACTAAAATCCATTCTGTTACTCTAAACATCCAGGTAGCTCTGTGTCCTGAATTACAGTTAATAAAACTCGCTATCAAAATACCCATGCCAGTGAGTCCTGCATTATTGGCATCATCTTGAATTAATGCCTTCCTGCCCAACTATCAGTTTCAGCTTCAATTCAGCTTTGACTAGCAGATGAACAAGCTACCATTCTTCCCCCACATAATTCTTCTTACAAAAGGACCATCGCTACACTGTATCCCCTTCTTTTGGTTTCTTTCTGACTGGTAGAGTGGTAGGTGTTGATGCCAACTGCCAAGTATAGCCTCCTTCCTTCAACTTCTCCATCATAAACAGTAGCAAGAAAGAAGCAGCACATCCTTTTTATCAGTTACAGTAATCAAATAGTCTGAACGTATTCCTGATTTTAGAGCCTATAACCAATCCTCTGCCACCATAATATATTTTGAATTACAGTAATAAATCTTGTTAGACTGCATAGCTCAAAGACATAATTAGCCGTCCTGGTTTGTCCTCTGAAACTAAAACAGCATACCTAGACAAGGTCAGCAAGTTAATTACCTATTCTCACTTCTCAGACCGGCTGCAGTTTTCCTTTTCTGAAACCAACGGCATGAGGCCTTTAACAAAGGAACGTCCTCGCAACCGCCAAATCGAAGGCACTCCCTCTAAAACAGAAGCCACATCATCAGCCTAGAACAAAATTCCTGCTCATGCTTCACATATTCTTCCTTTCCTTGGGCAGATCCTTCAATATCAGTAGGAAGTATGACATCCTTTTTACAGATGAGGAAGCATAACATCCTCATGAAGGGCTACAATTGAGGGTGGCCATGAGCCTAGGACTATCATTTCTCTTGTTCATCATGCTTCCTCCATGGATTCAGAGCTTCTCTCATGGCTTGAGCCTCTGGGCTGTTCTCCCAAGCTCTTTTTTCTGATTCCAACACAGTTACCTTCTCATAGAAGCCGGTGTGGATCATGAAGAGCTCCATGCTGGCACCTATGGCGGCGCCGCCTACCGCGATCTTGAGGTACCACCCCAGGAACCTCATATCCTTTCCCGTATGTCCGTGATGCAATCGAATGCACAGATATTTTTTTACTCTCGCACCCCACTCAGCTCTTGCTAGCTCTATGGCTCTATGACCTTCCGGTGTGGACTCTGCCCTGTGTACAGGTCGTCGGCCTCCCTCCTCGGCCCGCGCTGTAACTTTCCTCCGTCAAAGGTAGCTTGGCCGGAGAGAGAGAGAGATCCACCGCGCGGAGGCGGCGGCGGCGGCAGATGGAGCCGAGGTCAGACGGGGGAGAGAGAGAGAGAACGC

Coding Potentia
Explanation CPC Score
noncoding -1.31711
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0082800.1 11 342907 T C
Osa11LNT0082800.1 11 343337 C T
Osa11LNT0082800.1 11 345355 C T
Osa11LNT0082800.1 11 344319 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0082800.1 osa-miR5530 Cleavage 5.0 18.791 1 21
Osa11LNT0082800.1 osa-miR395a Cleavage 5.0 19.163 1 21
Osa11LNT0082800.1 osa-miR395f Translation 5.0 11.27 1 21
Osa11LNT0082800.1 osa-miR169d Translation 5.0 13.952 1 21
Osa11LNT0082800.1 osa-miR1428b Cleavage 5.0 16.721 1 21
Osa11LNT0082800.1 osa-miR1428c Cleavage 5.0 16.721 1 21
Osa11LNT0082800.1 osa-miR1428d Cleavage 5.0 16.721 1 21
Osa11LNT0082800.1 osa-miR2919 Translation 3.5 9.016 1 19
Osa11LNT0082800.1 osa-miR3979-5p Cleavage 5.0 21.938 1 20
Osa11LNT0082800.1 osa-miR3979-5p Cleavage 4.5 24.718 1 20
Osa11LNT0082800.1 osa-miR5517 Translation 4.0 17.915 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus