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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0083100.1

GAATTATTCTCTGTATTAATTGATTGAATCGATCGAGTTGAAACTTCATTATATACACATGACTGAACCAGGATTTGTTATGAATATATCAAGGTCTTATATATAGTACATTTGTATATACACAAGCTTCGAATCATCCTACAGTAGAATATGATGATGCATATATTAAGATTATGACATGTCAACTTGAACTGAGCATGCAATTAAGAGTTGCATGCATCATCGTGTATCTAAAATCTTCCTCTACGCCATGACCGTGCATTGGGCGAGTTAATCTTGTCTAGAATTAAAAACATCGCATTCCATGTCACCAAAAGGCCGCCTCCTAATAAATCATACCAGTTTGAGGTCACACCAATATAGTGGATGCAACACACATATCCAATCTCGCAAAGAACTCTCTGCACCAGGTCTGCATCCGGGTCCCCCAATCGAGGCATATCCTTGTAATAATAGTATGCACCTTTGGGCGGGGATGAACTGCGCTAGCTGCACTTGGTGGTGGTGGTTGGGATCGAGGGGATCCGATCGATCGATCTGTAGAGGAGGCAAATTAACCTAGCTTTGGGATGATATATCGATCTGCACTTGGCGGCGGTGGCGCTTGCCGGTGTGGATCCCAATCTCAAGGGGTAGCAGATGCAGCAAGAAAGGAGGAAGAAGATCGACTTGGGATCATGGTCGCGGGTGAGTGCGCCGTCGGGAGTCGTATATATTCCGGA

Coding Potentia
Explanation CPC Score
noncoding -1.41523
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0083100.1 11 529282 C T
Osa11LNT0083100.1 11 529545 G C
Osa11LNT0083100.1 11 530098 G C
Osa11LNT0083100.1 11 530150 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0083100.1 osa-miR169a Translation 5.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169b Translation 5.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169c Translation 5.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169e Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169f.1 Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169g Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169h Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169i-5p.1 Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169j Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169k Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169l Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169m Translation 4.0 16.465 1 21
Osa11LNT0083100.1 osa-miR169n Translation 3.5 16.465 1 21
Osa11LNT0083100.1 osa-miR169o Translation 3.5 16.465 1 21
Osa11LNT0083100.1 osa-miR169r-5p Translation 4.5 16.465 1 21
Osa11LNT0083100.1 osa-miR2877 Translation 4.5 22.747 1 24
Osa11LNT0083100.1 osa-miR2877 Cleavage 4.5 19.065 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0083100.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0083100.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus