© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0006700.1
CAACAACTTTGTCTCTTCTATCTTGGAGTGTCCTTGCACAGTTAATTTGATCTCCCTTTTTTCATGGAGGCAGATCTATACAGATCTCTTTAATCTATTTCTTCTCCCAACCGTAGTACATACATTCTTCAAGAAAGCAATGTTGTATATTCAAGAAGACAGAGACCACACAAGGTGAAAGAGAATGTGGTTAGTTTTCTTTTGGTATTGATCTTCACTATTTACCAGCCTTGTTGCTACTATCCATGATGATCCTGGTTGTCAGGAGTCCAGTATGGCTGGTAAGGCCATTCTGTCTCTTGGGAGTGAGGAATTGAAGCTTCTCCTTTTGTGCTCGAAGACGTGCAGCCCATTATCAGTTCCTCCAAGCCGGCAGACCTCCTGTCAAGCTTTTGTTGCTGCTGCTGAAATTTGTCGTGGTGGAGAAGGATTGCTGGCACGTGGAACTGATCATGATCAAGAACGACAGATGCATGCTGCATTGCTGGTGGCACTATATTTGATACAGGGTTCGTCGGCCGGCTGATCAGGAAGGCCGTGGCAGGCACCGCCGTCGTGGTTGCAAGCAACGGCCGGTGCGGCTGTTGTTCCTGGCCAGCATGCTGCTGCTCCGACCTCCCAAGCTGATTGGAGTGTACCTGATCACCACTTATACCAACCTCCTCGAAACTCTTCCTGAAAGGCGCGAAGCTGAAATGGTCGGCGGCATGCTTCAAATGCTGCATCTCGACGGCGGCGGCGACGGCGTACCCGGCCGTCGAGTAGGACGTCGCCGACACCTCGTGGTCCCTCGTCGACGAGCAGCTGCCGCTGCCGCTGTCCCTCCTGCGCTGCTGATCCTGCTGCACCGCCGCCGTCGTCACGGCGGATGCGGTGGCGGCGGCGCCGCCGCCGCGGTCGGAGGACCAGCTGCACTGCCGAGGCTGCGTCTGGTAGAAGATCTTGCAGACGACGAGCTCCCCTTCCTTCTCCTCCTCGAGGTCGCCGAGGTGGTACTGGTGCATCACCCAGTTGGTCTTCTCCGGCTTGCGGTGCTTGCCGAAGTTGGTGTAGAGGACCAGTATCTTCTTGCACCCCTTCTGCCGGCCGCTCACCATCACCGGCCGGGTCTTGCCGGTCTTGTGCCACCTCGTCTCCCCCTTCTGCACGTCGCACTCCGTCTGGATCTTCCGCCGCTTCCTCGTCCCCGTCGTGTACGCCTTCGACGGCCGGTGGAAGAAGTGCTTGCTCAGGCCGTCCCTTGTCACACCTGGAAGTTTCTCAGGGTGGGTGTAGCATATGCCGTCCTCCCCTTCTATCGTGGGTATGAACTCATCGATGAGAGGATGAGATCTTGAGCCTTCTTCCCTCACTTTGGCCTCGAGGTGCTCGATCAACTCCTGGTCCGTCGGATCGAACTTGACTCCTGCCGGTAGCCCCACCCAATCCGGTTTGCAGTCGAGCTTGTTGCCGCAGCTGGGGCAGTGCTTGGCCGTGGAGATCCGGCGTTCCTCGAGCTTGGCGTCGATGAGCTCCGAGCTGCTGATGTGCCCCCTATTCATGCCTGATTCATATGCGTCCGGCAGAGACCGTGCACATGCATGTGTAAGCCTCCTTCTTGTTGCTAGCTGTGAATAGAGCTGCAAGGGATCAAACAAACATACAGTTAATTAATACACACACAATTCAAGGAGAAGACAAGATCATCGAAATCGAATAACAGAAGCTATGCAGGAAGAAGAGGCCGGAAGCAAACCAAAGAGGACGAGTAGTAGAGGAGGAGGATGAGCAGTAGAAGAGCAAA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0006700.1 | 1 | 4880479 | G | T |
| Osa01LNT0006700.1 | 1 | 4880697 | A | G |
| Osa01LNT0006700.1 | 1 | 4880813 | T | C |
| Osa01LNT0006700.1 | 1 | 4880818 | G | C |
| Osa01LNT0006700.1 | 1 | 4880844 | G | A |
| Osa01LNT0006700.1 | 1 | 4881868 | G | A |
| Osa01LNT0006700.1 | 1 | 4885099 | T | A |
| Osa01LNT0006700.1 | 1 | 4883303 | A | G |
| Osa01LNT0006700.1 | 1 | 4883860 | A | G |
| Osa01LNT0006700.1 | 1 | 4884947 | T | A |
| Osa01LNT0006700.1 | 1 | 4885749 | G | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0006700.1 | osa-miR5826 | Cleavage | 5.0 | 18.972 | 1 | 24 |
| Osa01LNT0006700.1 | osa-miR5837.2 | Translation | 3.5 | 19.192 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399a | Cleavage | 3.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399b | Cleavage | 3.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399c | Cleavage | 3.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399d | Cleavage | 4.0 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399e | Cleavage | 4.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399f | Cleavage | 4.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399g | Cleavage | 4.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399h | Cleavage | 4.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399i | Cleavage | 3.5 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399j | Cleavage | 4.0 | 16.455 | 1 | 21 |
| Osa01LNT0006700.1 | osa-miR399k | Cleavage | 4.0 | 16.455 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0006700.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006700.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006700.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0006700.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0006700.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0006700.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0006700.1 | 1 | gn1 | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0006700.1 | 1 | sp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0006700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006700.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Osa01LNT0006700.1 | 1 | dn1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | gp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | gw1a | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | qLS1-2 | Morphological trait | Shoot/Seedling | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | qSSB1-1 | Morphological trait | Panicle/flower | RG532 | G359 |
| Osa01LNT0006700.1 | 1 | qSS1-2 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0006700.1 | 1 | qSW1-3 | Morphological trait | Seed | G359 | RG532 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)