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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0083500.1

TCTCGCATCGCGTTCGCCGCCGCTCGGATCCCCTTCCCACGCGTCCCTCCTCCTCCCTTCGTCCACCATCCACAACCCCCTCGGATCCCCTTCCGCCTCCCCCTCCGCTCCTCCCGCCGCCAGCCCGTCGCAGCTGCAGCCCGTCAGGCGTCCCTGACGAGTGGGGCGACTGCTCGCCCTCCGCGCCCGAGCCGCCCTCCCAGCCCGACCCCCCAATCGACGACGACGAGTGGGGCCGGGACGACCCCTCGTCCTCCGGCACCGGGTGGGGCGAGCCGGGTGTGTCCGAACCCCAATCCACCTCCGCCGCCGACGACGAGTAGGGTGGGGAACTGGGGATCCGGCGCCACCGCCACCACCACCTCCTGCCACCGGCGGGGATGGACCGTGGTGGGGGTGGGGGTGATGCCTCCGTGGCGGCGCTGCTGCTGCCGTCGGCGCCGATGGCGTACGCGGTGGTGACTGACCCGGGGACGGTCGACACCCCTGACATGCCCAGCTACCAGCCATACGTGTACGGCCGCCTCGACCCCCTGCGCTGATCCCGCTCCAGATGAAGGAGGTCGACCTGTCCGTCGACTGCGCGCTCGGCGAGGCCGCCGTCATCCGTCCGCGCGCGGTGGTGGCTGCACTTCATCACCCGCAGCCGCGACTGTGACGTCCGCGTCGTCGTGCCCATGGGCGACCAGCCTTCTAAGACAATTATGTCAGGACCAACTAATTTTCCTCCCTCTGGCCATTTTGTGAAGACCTAATGTTGTGGCACCACAGGCCATAGTTTGAATCTAAAGTGCTGCAGTTAAATATCTACAGAATGTTGCACATCATGAAAATCAGGGTATGCTTCTCATTCAGGCCATAGCTTGAATCTAAAGTGTATGCAGTTAATTCAGAATGTTACCCAAGGTTGAAGCACCACAGAACACGGACTGTTGGAAGACAATTTTCTTGTACATGTGTTTGATGAATTGTAACTGAACACATTTAATTTTCCTATGGACCATTTGTATATTTCTAAATCCGATTTGAATGAATTTGTTGGTACTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.27086
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0083500.1 11 706280 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0083500.1 osa-miR5837.2 Translation 4.5 16.553 1 21
Osa11LNT0083500.1 osa-miR1853-3p Translation 5.0 12.273 1 22
Osa11LNT0083500.1 osa-miR2104 Cleavage 4.5 12.251 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0083500.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0083500.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus