\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0083600.1

CTCATTTCGTCTATTCACACCAGTCAGTTGTTTTACCAACCCAACATGGAACTCAAACCCTATACTGAGAATTGTAAACTTTATCTATGTATTCACACCGGTCAATTTCACCAAACCTAGACAGAACCCAAACCATACACAAAACCAGAAACCTATAATTAAATTACATTTGCAAACCAATGTGGATAAAGAATGGACAAAAACAATATGCACAGCAGTCACAATCAAACCAATTCCAGACCCAGAGAGGACAACAAATAACATGCGTCAATCTGTGTCAGGTACCAATGCATTTGGCTGAGACATTGCTTGGTAAATTGGCAGCACTGCTTTTAGAATTGCTGGATTTGGGGGATGATGACTCACATGAGCTGAGGATTGGAGATTCAGGCCTTGAGGGGACAGGAGATAGTTCTTCACGATCTAAATAAGCCTCAACTACAGGAAACATATCTTCTGAGTAAGTGTGATTGCTATCTTCTCCTGGTATACTGTCTTCCATGTCACCATCATCCAAGGGGGCAACATCGTGGGTGGTGAATTGATGAAAATCTACTATCTCACGCAAGAAACGATTTTCGCGTGCGTACATGGAGTTTTCCTGCGCCAGTCTTGATTTCTCGGCCAATAAGGTCTCCAGTTGCACACGAATCTGTTCAGTAGCATGTTCTTCAGGCACATATTTTAAATATGTATAAGACATGTTTTACTCATTACTGAACAGTGATAAGAAAAAAATAACTAAAATCTGTTGTACACAAGCAATGAACCTCTTCTAAGTGTGAAGTTAATAATCAGCTTAAAGTACCAATGCTTAATAGTTTATCTGACATGATATAGTGGTTCAAATTTTCATCAGCAATACATCAGGCTTTCATATCAACCGACCACATTGTGCAACGTACTACAAAATTTGCATATCTTTTTCAAAATTGTCCAGAAATGCAAGGGAAAGAAGAAATTTCAAACTTTTCAATGATCATAGCCAGAGTTTTAGGATGAGTCATCACAAATTTACCATCAAGAAGAAAGTAGTTCTGATAACTTTATCATGAGAATAAAATAATTCCAGGGTTACTTGCTTGGAAAACATTAACATACCAGGTCATCATCCTCTTCAGTTTTGCTCCCTTTCTGCTTTGCTTCTCGCAAGAACTTGTTCTCCTCTTCTAGCTGAGCACATCGCTGCTTCGCAAAAGCTAGATCAGCTTTTACTGTTTTTAGTTCACGGAGCACAAGTTTTGCTTTAGCAGCCATTGCATTAGCAACCTTACATCGCGAGAAGCTTTTAATTGGGTTTCCTGGGCTGCAGTTTCAGCTTGATCATTTGAAAGATTAGGAGGTCTTAATGTATCAAATGCTAGGTTCGGCACATAAGAATTCGAATTGGCTTGCTTCCTTCTAATTTGTATCTTCTTTGTCTCCTCAATGATATTGGATGTCTTATTGTCCACAATTGTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.95727
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0083600.1 11 845291 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0083600.1 osa-miR5143b Cleavage 3.5 11.919 1 24
Osa11LNT0083600.1 osa-miR160d-3p Cleavage 4.0 13.402 1 21
Osa11LNT0083600.1 osa-miR817 Cleavage 5.0 22.387 1 21
Osa11LNT0083600.1 osa-miR2098-3p Cleavage 5.0 17.389 1 20
Osa11LNT0083600.1 osa-miR5143a Cleavage 3.5 11.919 1 24
Osa11LNT0083600.1 osa-miR5491 Cleavage 5.0 10.854 1 21
Osa11LNT0083600.1 osa-miR5507 Cleavage 5.0 9.932 1 21
Osa11LNT0083600.1 osa-miR5508 Cleavage 5.0 8.466 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0083600.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0083600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus