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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0083900.1

CAAAGCCAATACACTCCAAGGCACTCCAAATATCACATGAGTTGATGACATGATTACATGGGTTATCAATATTTTTTTTGCGGGGATACATGGGTTATCAATATGACATTGCAAGGTTAAAAAAAAAGTAGGTAATGAATTTCCTCCGTGCAATACCAACAGCCTTGAACAAATTGAAAATAAATCCTGCAAAAGAGGTTATCAAAACAAGCCTTTACTTGAATTTCCCACCTTGACAAACCAAAGAATGGGCTTGAAAATAAACAGTTGATATCACATAGATGAAAATTTGTACTTTCTATACCAACAACAGTGACAAACATGTGGTGGCAGTGTAAAAAAATTCCACCACTTCAAAGAATTTTAATAAACATACTCAATGATCACACACTTCTGCTGTAATAATCACTAATTCACACAATTGTTAAATGGCCATTGGATCAGATCTTAGTTTCAAGATATTTTTTTCCACATATGAAAACTCCTTTATTCTACCAAAAATGCTCATAAATGGTCTGTAGAAAAGCAATGTCTGTTTACTAGCATTTAAATCCATAGTTTGCTGTGTTGAAATAGAAAGTAAAGGTAATGTAGGTGTGTTATAAATTTAATAACCACAAGTGAATATATTTGACTATACAATTTGATCTTCATCTCACACAAAGTTTGTCGCTAAATATGTGGAGATGAGGTTAACAGCACCTGGAGGCTTGTGTTGGATCCATGATCTAGTGGACAAAGCTTACATGCAACCTTGGAGATCACTGAATTGAATAAAAAAGGACAATCTTGTACACATGCATAATTAGAATAATTGAAAGGCCACAGATGGCTGATTATACTTATACCAGCCTGAAAGCTTAGATCATGGTACAAAGATGTTGTTACTAACAAAAAAAAAAGATAAGGACGAATGAATAGAATCCTAAGCAACATGAACAACCTTGATGAGGACTGTATATAAGACTGGGAGTGTCTACATCATTTCACATATCTTTTGATAAAAAAACTGCCAGATTTTCCACCAAACGATTTAAAAAACAGAACTTGCTAGGTTAGTTCACACTACCCATTCATCTAGTTATTTATTATATTTATCCTAATGTATGTATTAACATGTACATTCATGTACATATGAGTATTATTCATGTCGTAGTTCGCAGCTCTATCCTGAATAAAAATAGCTATGTGTTTAGCAGAATTTGCATCCATTCATACCTTACTGATTCACTGGTTAGCAGAAATCGGCCAATTGCAACCATCAATTCTTCATTCAAAACAACAATAATGCTAGCAAAAACAGGTCACAAGTTGCATATTATTCCTAAGAAAGTTCCAGCATGAAATCTTACTTCATCTGTATAACTATAATAATTACTAGTACATATGGTAGAGAATGGTAATAGTGAGGGGGCAGTGCTGGTGGATGATGACATGGATTTGCACGTTTGGAACACTTACTTCATCACCTCCTAATGTAATCTGACATTCCAAACAATTATGGCATGAGCAAGATAGCCAAAGCTTGGGTTCAACAAATTCTAATAGATCGTGTGCACATAGTATGACAATCACTGCCAGCACTAATATGGTGTTTGGGATTATTAAATAGTGTTCTCACCAGATCTTGCAAATATATATATCACGTCCATGCTGCAGCTTCTAGTAGATGCAAATGACCTTCGTGTGAGTAGCTAACTGGAGCTGCTATGATAAGCGGTCGTTGATTGGCAGGAACAAATTCAGCCAGTGAATCCATCACGGTGAGGTGGTTGCTGCTGGTGCTGAAACTGAAAACATAGGGGATGCGCGCGGGCAAAGCCGCCAGGGACCACCCGTTCAACACGGATGATGCACTCATGCCAGCGCCGCGCGGCTGGACCGGATCACGTCAGTTGACAACATGGGGCTCTTTATGGACAATTTCACAAACACATTGCATACAAGACGAGATGCTGGAGAAAAAAACGACAGCTTAGGGTGGTGATAGGTGTTACCAGCGTCTTGGCTCCAGCCGTTCGGGACGGGGCGGAAGTTGGACCACTTGGAGGAGTTTGCCTTGCCGAGGATGGTGGCAGCGGCGGCGCGGAGGCCGGCCGTCACGCTGGCGTCACGACAGACGACGAAGCCGAGCAGCGCGAACGACCCGGCCGTCGTTTTCAGCCGGTCCCGCGTCACGATGTTGTCCTTGAGGATGGGGACGCCATGGAGCGGCCCGCAGTAGCGGTGGCTAGAGGCGCGCTCGCGGTGTCGGCGCGCGCCGGCTGCTGGAGCGCGTCGGAGTTGACCTCGATGACGGCGTGGAGAAGCGCGTTGAGGCGGGTGATCTTGCCCTGGGGACGAGCGACCAGGGCTGAGGCACTGCCGCACCGGCGACGTCGCCTGGGCTGCAAGGGATTGTGCCGTCGGCCGCGGCGGGCCCCGCCATCCGCTGTGGAGAAGCTGCGAAGGCTGGAGAGATTGGGTCGGTATGTAC

Coding Potentia
Explanation CPC Score
noncoding -1.22103
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0083900.1 11 1029061 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0083900.1 osa-miR5830 Cleavage 3.5 14.62 1 24
Osa11LNT0083900.1 osa-miR159a.2 Translation 5.0 14.814 1 21
Osa11LNT0083900.1 osa-miR408-3p Cleavage 4.0 19.473 1 21
Osa11LNT0083900.1 osa-miR395w Cleavage 4.5 9.745 1 22
Osa11LNT0083900.1 osa-miR2275d Cleavage 4.5 15.78 1 22
Osa11LNT0083900.1 osa-miR395f Cleavage 4.0 10.096 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0083900.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0083900.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus