>Osa11LNT0084900.1

CATCAATCAGCCAATGGAGAAGTTCCATGTAGTTTCAGGATTGGGACACCTCACAGATTTTCAGCGAGTCAATGCATCATCAGTCAGGACAAATACAGATATGAAAAATTGATGGAGTTCATCAACAATATTGTAATGCTAGCCACCTCAAGAATCTCAGTTATTATCTAAAAATAATTACATAACTGTGAAATGGCTATGAGTAATAACATTCAAACAATAGCTACACAACCTATTCTCTATAGGATGGATTTGATACAACGTCTGAACTCTATTGGATCTGATACAACTTCTGAACTATCTGATAGAACCCCCTACTCATTGGGTAGTCACACTCTTTGCCAGATTCCTTGGTTGATCAACATCAAATCCTCGAAGAACTGTCAGATGGTATGCGAGCAGCTGTAACGGAATTATGTTAATCACTGGCTGGAGACAGTCAGCGACCTCTGGAACTTCAATAACCCTGCAAGATCCACTAGGGCAAACGGCAGATGCGTCTCCCTTTGAGCACATCACTATCAGACGCCCCTTGCGAGAAAGGAGCTGCTGAATCACTGATTGCTGCTTGCTGAAGCACGCATCACGTGTAGCAATGACGATGATCGGAAGGTTTTCATCCACTAGTGCAAGTGGTCCATGCTTCATTTCACCAGCAAGCATGCCTTCGCTGTGCATCAGAGCAACCTCCTTAACTTTAAGAGCACCCTCTAAGGCAGTGGCATAGTTATAACCTCTGCCAAACACAAGGAGAGACTCTGAATCGATCAAGGAAGAGGCAAGTTCCTTCATCTCAGTATCAAGTTTGAAAACCTCGCTGACATTGCTTGGAAGATTGGAAAGACCACTGATGATAGCTTGACGTCTAACTTGGGTGGATATTTGATCAGATCCAACAGCCAAGGCCACCATCACCATGACTACTATTTGACTTGTATATGCCTTCGTACTAGCAACACCTATCTCACAACCAGCATTGATATGAACTCCACAATGTGTTCTTCTTGACAGTGTGCTTCCTACGGTATTTGTTATGCCAACACAAAGTGCTCCATTTTCTAGTGCATAATCAAGAGCAAGGAGGGTATCTGCTGTCTCCCCTGACTGGCTAACGAAAAATGCAGTGTCTTCCCTGTAGATGGGACCTTGTCTGTCCAGCAAGTCACTTGCAACCTCCATAGTCACAGGAATACCAGTTAATTCCTCCACAAAAGGTCTTGCAGCCAAGGCAGCATTGTAACTTGTACCACAGCCAATGAAAACTAACCTTCTACTGCGCCTAATAGTTTTGAGGTACTCCTTTTCCTTTAATCCTCCTAAAAGAACACCACTATCCTTCACTCTACCCCTCATGGTTGTTGTTAATGAATGTGGCTGTTCATGGATTTCCTTTTGCATGAAGTGGTCATAACTTCCTTTCTTTATCTGCTCAACTTCCATCTCAAGGACAGACAATGCTCGTTGAACAGAAGCTGGCTTCTCTTTCTCATGGTCAAACTTAAGGATCGACACACTGCCGTCCTTAATATGAACAATTTCATCATCTTCGATAGCCAAATAATTCTTGGTATGCTCCACAATAGCAAATAAATCACTAGAGAAGAATAATTCTTTCGGCTTCCCGTTTGTTGTCAGAGCTTTGACATCATGAAATGGTTTCCCACTATTTTGGCCACTTAATTCATTGACACCGAGTATCAGTGTGCTGCCCCGTTTGCATGCAATCAATTCATTGGGGTAGTGTGGGCTTTTAAAGATGAGTGCGTAGGCTCCTTCAAGCTGCCTCATGACTTCCATAACAACTTGGCTAAATGTCACATCACCTTCTTCATCATGTGCCTTATCAAAAACAAACTTTGCCAACTTAGGGATGACTTCTGTGTCAGTATCAGACTCAAAGGTGAACCCATGTCGGATTAGTGTCTCTTTCAGAACCTCGTTGTTTGTGATGATGCCATTGTGGACGACCAAGAATTCATCGCCAGCACCAGAAGATTGGGGGTGGCTGTTCCTTGGGGCAGGCACACCGTGCGTGGCCCACCTGGTGTGGGCAATTCCAGCATGCACATTGAAGGCGGCGTCCAGGTTCACATCCTTCTCATCAACCTCGGAGTAGACGGATCGCACGAGGTTCTCGATCTTGCCCTCCTGGCGGAACACCAGCGGGGGCGCCCCGGCGTACGGCGGCACCGCAGAAGTAGAAGCGCAGGAGGGAACGTCGGCGTCGACGGCGATACCGGAGGAGTCGTAGCCGCGGTACTCGAGGCGGCGGAGGCCATTGAAGAGGACCTCGAGGATGTACCGGCGCTCCCGCGACACATTGTAGTTGAGGTACGCGAAGATCCCGCACATCGTGCGCCGCGCCGCGCTGGGTTGGGCTACTAGAAGCTTCCAGAAGTTTCTGGGCTCGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACGCGGTTACGTCGGCGGCGAGGAGTCGCCGGCCGAGGCGGAGGAAGAAGAGGAGAAAAAGGCCGCGTTTTTTTCTTATTTTTTGATAGGAGA

Explanation	CPC Score
noncoding	-1.04907

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0084900.1	11	1554989	T	C
Osa11LNT0084900.1	11	1554622	C	T
Osa11LNT0084900.1	11	1554943	T	A
Osa11LNT0084900.1	11	1555621	T	G
Osa11LNT0084900.1	11	1556390	A	C
Osa11LNT0084900.1	11	1556608	T	C
Osa11LNT0084900.1	11	1557324	T	C
Osa11LNT0084900.1	11	1557354	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0084900.1	osa-miR169q	Cleavage	4.5	18.12	1	21
Osa11LNT0084900.1	osa-miR171i-5p	Cleavage	4.5	19.955	1	21
Osa11LNT0084900.1	osa-miR1850.3	Cleavage	5.0	11.154	1	22
Osa11LNT0084900.1	osa-miR2870	Translation	3.5	18.864	1	21
Osa11LNT0084900.1	osa-miR3979-5p	Cleavage	5.0	17.585	1	20
Osa11LNT0084900.1	osa-miR5505	Cleavage	3.0	21.495	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0084900.1	11	nan	Morphological trait	Panicle/flower	RM286	RM332
Osa11LNT0084900.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus