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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0084900.2

CATCAATCAGCCAATGGAGAAGTTCCATGTAGTTTCAGGATTGGGACACCTCACAGATTTTCAGCGAGTCAATGCATCATCAGTCAGGACAAATACAGATATGAAAAATTGATGGAGTTCATCAACAATATTGTAATGCTAGCCACCTCAAGAATCTCAGTTATTATCTAAAAATAATTACATAACTGTGAAATGGCTATGAGTAATAACATTCAAACAATAGCTACACAACCTATTCTCTATAGGATGGATTTGATACAACGTCTGAACTCTATTGGATCTGATACAACTTCTGAACTATCTGATAGAACCCCCTACTCATTGGGTAGTCACACTCTTTGCCAGATTCCTTGGTTGATCAACATCAAATCCTCGAAGAACTGTCAGATGGTATGCGAGCAGCTGTAACGGAATTATGTTAATCACTGGCTGGAGACAGTCAGCGACCTCTGGAACTTCAATAACCCTGCAAGATCCACTAGGGCAAACGGCAGATGCGTCTCCCTTTGAGCACATCACTATCAGACGCCCCTTGCGAGAAAGGAGCTGCTGAATCACTGATTGCTGCTTGCTGAAGCACGCATCACGTGTAGCAATGACGATGATCGGAAGGTTTTCATCCACTAGTGCAAGTGGTCCATGCTTCATTTCACCAGCAAGCATGCCTTCGCTGTGCATCAGAGCAACCTCCTTAACTTTAAGAGCACCCTCTAAGGCAGTGGCATAGTTATAACCTCTGCCAAACACAAGGAGAGACTCTGAATCGATCAAGGAAGAGGCAAGTTCCTTCATCTCAGTATCAAGTTTGAAAACCTCGCTGACATTGCTTGGAAGATTGGAAAGACCACTGATGATAGCTTGACGTCTAACTTGGGTGGATATTTGATCAGATCCAACAGCCAAGGCCACCATCACCATGACTACTATTTGACTTGTATATGCCTTCGTACTAGCAACACCTATCTCACAACCAGCATTGATATGAACTCCACAATGTGTTCTTCTTGACAGTGTGCTTCCTACGGTATTTGTTATGCCAACACAAAGTGCTCCATTTTCTAGTGCATAATCAAGAGCAAGGAGGGTATCTGCTGTCTCCCCTGACTGGCTAACGAAAAATGCAGTGTCTTCCCTGTAGATGGGACCTTGTCTGTCCAGCAAGTCACTTGCAACCTTCTACTGCGCCTAATAGTTTTGAGGTACTCCTTTTCCTTTAATCCTCCTAAAAGAACACCACTATCCTTCACTCTACCCCTCATGGTTGTTGTTAATGAATGTGGCTGTTCATGGATTTCCTTTTGCATGAAGTGGTCATAACTTCCTTTCTTTATCTGCTCAACTTCCATCTCAAGGACAGACAATGCTCGTTGAACAGAAGCTGGCTTCTCTTTCTCATGGTCAAACTTAAGGATCGACACACTGCCGTCCTTAATATGAACAATTTCATCATCTTCGATAGCCAAATAATTCTTGGTATGCTCCACAATAGCAAATAAATCACTAGAGAAGAATAATTCTTTCGGCTTCCCGTTTGTTGTCAGAGCTTTG

Coding Potentia
Explanation CPC Score
noncoding -1.16238
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0084900.2 11 1554989 T C
Osa11LNT0084900.2 11 1554622 C T
Osa11LNT0084900.2 11 1554943 T A
Osa11LNT0084900.2 11 1555621 T G
Osa11LNT0084900.2 11 1556390 A C
Osa11LNT0084900.2 11 1556608 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0084900.2 osa-miR169q Cleavage 4.5 18.12 1 21
Osa11LNT0084900.2 osa-miR1850.3 Cleavage 5.0 11.154 1 22
Osa11LNT0084900.2 osa-miR2870 Translation 3.5 20.243 1 21
Osa11LNT0084900.2 osa-miR5505 Cleavage 3.0 21.495 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0084900.2 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0084900.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus