>Osa11LNT0085000.1

CCGGCAATAATTTCATTCCCAAGCTGATGTCACTTACAGAGTTTTACTAGTTACAATGTAGTACTCTATACATTATACTAGTAGAATGCTACTCGGTATTACATGTAGGCTGGCCATGAAAAACCTAGCCATCAATTTGGCCACCATTTACCCCCAACTATATATATTCCTTTCGCTGAAATGCTGCAATTGCATATCTGGCACCTACTATACAAGCATAAGGAGGTACCAACCCTCACTTCTATCTATTGCTCCTGGGACATCCAGATGAGCATCATGTTATATGCCTTCGCTTCACAGCCGGCTGCAGGGCTCATGAAATTGCCAACATCTGAAGTTCTGAAGAATCTAGATCTGTAGTATACCTGAACAGTCTAATTTGTATCATGCTGCTGTGGCACGGCCAGAAAGGGTTTGAAAGTGAGGATAAGTCCAAGCAACTCGAAGAGATTCAAAAGAAAGAACACCATCTGATCACCTGGAAGGAAGGAAGCCTGCTGGCGTTTTTGTGCCCACGAGAACACAATGCCCGCCCCTGCTGGAGCCACTGCCTTAAAAAAGGACATTCCTGTCATTGCCAAGCCATTAGCAGCCCCTCGTTGGTCTTGAGGCACAGCATTATTTTGTAGGATGAAACAGCCTGTAATGATGGTAACACCAAGATTATTTTTTATAACTGACGCAATGTTCAGTATGATCGTTAATCCAGGTCCCGATAGGTATGTCATATATGGATATGCAAAGAGAATAGGTATGCACAGAATAGCTGCAATTCGAGAAGCCTTAATATGGCCTATAACCTTGTTGATACGAGGATAAATGAAGAGTTGATACACAAGAAGACTGGCACCTGTGATTGCAAGCACTTGACCCACATCCTCAGATGACAAACTCAGCCCACCGTACTTCCTGTCACTTTCTGCCCATAGAGAGAATATCTCTGTATAAGCCATATCATGAAAGGAGAAGACACAATAAAGAATTATGGAGGACATCAAGGGCCAATTGCTCAATAAGCTCTTCTTGCAGTCCAAACTACCATTTTGGTCAGCCTTTTCTTCTGGATCAATCAAATGGCTCTCCAAAGCTTCAACAGTTTGAGATCTATTTGCATCAGCTTTATGCTTGTGTAATGTCTCCGGCATCCATATGCAGCCTATGAGAACAACAGCAGCAAAGACTGATATGCACAAGCAGGGTAAGAAATATGGGAACCTTGCAAACAGTGAGTCAGGGGAAAAGACATTGGGAAATTTCTCTGCAGGCTGTGAAAGGTAGCCTCCAATAGCTGGACCAATTATAAGACCTATTCCCCATGCCGTACTAACAAGTGACAATGCAAGAGCTTCATGTTCAGGTCGGCAAACTTCAATAGCATAGGCCTTTATTGGCCCAAGTAAACCATTTAAAGCACCAAGAAGGAATCTTGTAGCTATTGCCATCCAATAGGTGAAACTAAGCCCAAATAGCGTATTAAATATGACCACCGCGAAAATGCCAAACACAACAACTGGTTTCCTCCCAATACGATCTGCTGCTATTCCCCAAATAGTTGAAGTCAAACATCGACCGAACATAAACGAAGCACCCACAAAGCCGGCATAGAACCCAATATCTTCTGTCCTTTTTGCAACATGCAAGTCTCTTATCATGAAGTACAAGAAGGGGAACAATGATGATATTGGTAAAGCTGTGCAGAGTGTGACGATCCAGACGAAGAGGAAGCTCCCGTATGGGATGCCGGAGCTCGCGGCCTTCCGCCGGTCGACGACGCACCCGGGGCACCCCTCAATGCAGGACCCATCGCCCTCGCCGGTGCCGGTGCTGCCCTTCTTCTCCAGCAGCGGAGCCGCCGCCTCCGCCTGCCGCCGGCGTCCATGGTCGCCCATCAATTCACCAATCTCGCTCGCTGTGTCGATCTCTCTGACTCGATAGACCTTGGCTCTGTCTGAATGGCTGTATTGTATTGAATAACTGATGGGTAGTTGTTGAGATCGATTAACTACGCCTATATATTGCCTCTAGGAGCAGAGCAGAAAACGCATGGAACAGAAAAGCCACGGGAAGAAGAGTAGAAGACGAAACAGGCTTTCCGTTGTCCAAATAGTATATGATTGTAAG

Explanation	CPC Score
noncoding	-1.13901

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0085000.1	11	1667652	C	T
Osa11LNT0085000.1	11	1658042	T	C
Osa11LNT0085000.1	11	1659611	T	C
Osa11LNT0085000.1	11	1659531	C	T
Osa11LNT0085000.1	11	1660685	C	T
Osa11LNT0085000.1	11	1661921	C	T
Osa11LNT0085000.1	11	1664001	G	A
Osa11LNT0085000.1	11	1665152	T	A
Osa11LNT0085000.1	11	1665381	T	C
Osa11LNT0085000.1	11	1666211	A	G
Osa11LNT0085000.1	11	1667269	G	A
Osa11LNT0085000.1	11	1668018	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa11LNT0085000.1	DTM_#DNAt_MULE_japo_Os0103	Chr11	-	1662715	1662869	154

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0085000.1	osa-miR160a-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160b-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160c-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160d-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR167c-3p	Cleavage	4.5	18.491	1	23
Osa11LNT0085000.1	osa-miR159a.2	Cleavage	5.0	15.9	1	21
Osa11LNT0085000.1	osa-miR319a-3p	Translation	4.5	15.837	1	21
Osa11LNT0085000.1	osa-miR319a-3p.2-3p	Translation	5.0	21.889	1	20
Osa11LNT0085000.1	osa-miR319b	Translation	5.0	21.889	1	20
Osa11LNT0085000.1	osa-miR160e-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR171i-5p	Translation	4.5	16.478	1	21
Osa11LNT0085000.1	osa-miR815a	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR815b	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR815c	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR1432-3p	Translation	4.5	17.144	1	21
Osa11LNT0085000.1	osa-miR2097-3p	Cleavage	5.0	11.44	1	22
Osa11LNT0085000.1	osa-miR2100-3p	Cleavage	5.0	16.992	1	22
Osa11LNT0085000.1	osa-miR5486	Cleavage	4.5	20.918	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0085000.1	11	nan	Morphological trait	Panicle/flower	RM286	RM332
Osa11LNT0085000.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus