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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0085400.2

ATGGGCAATGCTAGAAAGTCTAATAATATGATACGGAGGGAGTACCTGTTTTGGATAATAGAAAAAGAGTTAGTTATTATAACACCAGCAGTAATTGGCATTTTAGTATTCTCTACCATCTGGAGTACATTGAACCACTTAAAAGATACTATATTAGATTTGGAATTCAACAAGTTGAAGGTTTCACTGTATTTACATATAAGAAGAATGGATCCATGTTACATATCAGTAGAGAAACGCCTAGGGTCTTCCGGCTAGCTCCACAAGGTGATGGGCTAGCCGGCTTGGGTTCGAAGCCTCACCTCTTCTATTTATTTGATATTAGGTCCTTCCCTAATATTCATGTTTTTTTATGTTGCATACCAGTACATGACACAACAGACTTATGACAGAAAATGAGCCAGAGTAACTGACTCAAATTAATGTGCTGGTAATAGGCAGCGAACAATAAGCAAATTCAATTCAAGATACCGACCGGTACTCAATGAGATGAAAGGATTTGATTTGATATGGTTCAGGGAGATGGAGAGGTGGCGAGGAGGAAGACATGGATGGCATGCATAAGACCAGAGGCATCGGGAGATCGGCAGCTAGGAGGGACGTACTTGGCCGCGTGTTCCATGGTATACTCGCCGATCTCAGCTGCCTCGCCACCGCAGCGCAGCCACAGGGCCTCCATGTAGCTCGTGTGTGCGAAATAGGCCTCCGCCTCCACTACCTCTCCTGATCCTCCCTCAACTACCACGGTCACTTTGCGCCGCTCATACACACCCAGGTGGGTGCCCTCGAGGGCATCGAGGTCAACTAGGGCGCGGGGGGACACGGCGTAGAGCTCGCCGGAGACGAGATGGCTACCGGAGGATGAACTTGGCCTGGGGAGGAGGAACGGAACAGAGTAGGGCCCCACAACAAGCGAGGCCGGGGTGGCGGTGGAGGCAGCACCAACCAAGGGGGAACCGGAGGCGGCGAGGAGAGGGTGGTTGGGGAAACCACGCTTCAGGGTGCCGTACACGAACACCATTGTCGCCGCCTCCACTCCTCCCCCTCCATTGCTCAATTTCTGCTCCACTGGAGTTTGGACGCTCCTCATCTTTACTCACCGACTTACCAGCCCACCCGCGGCGGTGGGGGGAAAGGGGAAGAATAAAAGCCATCGAGCAATCCACAGCGACGAGAGGCAAAGGGGAACGGGGCAACGGGCTTGCGGAGAAGAGAGGAGAGCCAACCGAGGAGGAAGAGTCGGGCGGCGCCGGTGGTGGCGAGGGGCGGCGCCGGTGGAGCGAGTGAAGCCTTCGGCTCCTTCGGCTGCGTGCTCAGCGAGGAGAGCGCCGCGACGCTCTGGGGAAGACGGCTGCACGGATGGCGGGGAGAGGCGGCGGCGCGTCTGGCCGGCGGTGGCGGATGGTGAGGGGAGACGGCGGCGCGGATGGCGGGGAGAGACGGCGGCGCGGATGGCGAGGGGAGATGGCGGGGAGAGGCGGCGGCGCGTCTGGGCGGCGCCGGCGGATGGCGACGGCGGCGCGGATGGCGGGGGAGACGGCGACGCGGATGGCGAGGGGAGAGACGGCGGCGGCTTGGTCGCCAGTCGTCCCTCCCTTCACCTTCTCGCTCGCTCGGTCAAGACGGAAGACGTCGTATGGTTCAATCCAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.276313
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0085400.2 11 1842539 G C
Osa11LNT0085400.2 11 1842821 A G
Osa11LNT0085400.2 11 1843955 A G
Osa11LNT0085400.2 11 1844865 T C
Osa11LNT0085400.2 11 1845670 A C
Osa11LNT0085400.2 11 1845283 A G
Osa11LNT0085400.2 11 1843484 T C
Osa11LNT0085400.2 11 1845121 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0085400.2 osa-miR2103 Translation 3.5 15.314 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0085400.2 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0085400.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus