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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0085700.1

ACATTGTGATTTTAAGCCAGTTAAGCCTTCAAATTCCTGCTGAGATTAAGGGCCACTGAAAACATCTTGTGCCATATTTGTTAAGGAATATCTTAAAACCACTACCAAACAACTTTAATGGGCAAGTTTCCCAACTGCATTCAGGTAAAGTTCCCAACTTAAATGGGCAAGTTTCCCAACTACATTCAGGTAAATTTCCCAACTTTCATGGGCAACAGGGCAAGTTTCCCAACTACATTCAGGTAAATCACGCAAAGAGGAGTCACATAGATGATAGATCAACAACTAGTAGCTAATAACTTACTACAACCTTCATCCATAGGAACACATGGATCCCTCAGAAGACGCATCGGTATGCCACACGCTTCCCAGTAAGTTCACCGTCATATATAACTTTAACCACGGTTCCCTTGTCAAAGCCATAGTAGCGAGCAACAGCATCAGTCTCTAGCATGCGTGGCAACTGTGAGTCTTCCACATTGTATTCCTTGAGGAGCTTGGCCTTTTGATCTGCACTCAACACTTCATGCTTGGGTTTCAGGACATGCTTAGTAATGTTTACCAGTAAATCTGTGGCCTGGAATATGTCCACTTTAAATTTAAAGATCTCCTTGATAGCCTCTCTAGCTCTAGATAATATTTTGCTCTGCAGTATCAGAACAAGCCTGGACAAGTTCTCTTCTTTTGTTTGGAGATATATCTCTCGGATAGTTGCGATTTTGACAGGCTCTGGTGGACAGAATACAAGTTGTACCTTCTTGGAGGGGTCGGAGACGAGGGTGGTGGTGAAGGCGAGGCGTTCGATCCCGGGCTTCTCAGCCCACCAGGCGCGGAACTCAGGGAGGGTGCGGGCGATCTCGGCCTCCGGCACGCTGTACCCGCGGTCGCGGAGCATCTCCATCGCCGTCCGGCGCGCCAGGAACAGGCGGTGGCTCTCCACGCTGCCGCGGTCGATCATCGATGCTATGCATTCGGGGACCTCATGCACGTCGACGTCGTCGACTTCCATCTCCGCCGCCATGGCGACGGCGGGAGGGGGAGCGTCGCGCGCAGCAGCGGGGACGACGGCAGGAGGAGGGGCGGAGACAGCGGCGGGAGGGGAAACGTCGTGTGCGGCGGAGGGAGGGGAAACGTCGCGGGCGGCGGCAGGAGGAGGGGAAACGTCGCGTGCGGCGGAGGCGGCGGCGGGAGGGGAAACGTCGCGGGCGGCGGGGGCGGCGGCGGGAGGAGGGGAAACGTCGCGGGCGGCGGTGGTGCTCTCGGCGGTTTCTATTGAGGTGGCGGCGGTCGCGCTCTCAGCCGATTCTATTGTC

Coding Potentia
Explanation CPC Score
noncoding -1.13581
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0085700.1 11 2015993 A T
Osa11LNT0085700.1 11 2017710 G C
Osa11LNT0085700.1 11 2015902 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0085700.1 osa-miR7695-5p Translation 5.0 20.605 1 24
Osa11LNT0085700.1 osa-miR156j-3p Cleavage 5.0 17.855 1 22
Osa11LNT0085700.1 osa-miR1850.1 Cleavage 5.0 17.119 1 21
Osa11LNT0085700.1 osa-miR395x Translation 4.5 17.675 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0085700.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0085700.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus