>Osa11LNT0085800.1

AGAAACCGTCAGACTAATTACGTATTGCCATCTACAACATAATGAATGAATGATCTTACCTACAAAATAGTCCTGGAAATGGCCAAAAAAACATCCATCAGCTGGTCGTTATGCTTTCTTCAGTTAAGAATTAAGAGTGTTCCCTTTTGTTAATGAAGTATTTACTGTAGGTCTTCACTAAAAGCCCTGTAAATGAAATCCCTGAACCTTTTGCAGTATTGCTTTGGATCAACAGCCGATATGGAGTTGGGATCATATTGCATGGATTTGTAGGCATGCTCAAGCTTCTTGCTGATATCATAGTCTTGTAGGATGTCAATGATTCCAAAGAACAGGATAACGTCCTGGAATTCCCCTGTAGGTTCGCCAATGAGCTGGGATTCACTTTCAGGATTCTTCACAACATTCTCCACCCTTGAGGGCATGCTGATCCCTAGCTTGACTGGTGCTTTTCTTCTTTCCTCATCTTCAAGAGCAGTTTGAGTTGTCTCGTTGTCAGGACTGCTGCTGTCTCTTTGCATCGGTCTTTGAAGTGAACGCCAACCAGAAGACTGTAATCCATAATTCTCTCTTGCTCCAGAAACTCACAATCCTTGTCCAATTGCCTGCAGAAATCTTCATACCATGATCCCTCTAACCGGAAAATGAAATTGAGATCAAGGTCCTTCAAAGTGGTAGTCTCATCGATTTGATCAATGGGTTTGTCCGTTGTGCGACCATGTGATGATCCTTTCAAATCAAAGCGTCTGTGGATTGAATAGTTGGAGCAGAAAAGATTCCCCATTATAACAAACCGAACCTTTTTCTGAATAGCTCCTGTAATTTTAACACAATGCAGGCCGAAAAATTTTGTTACTAGAGTATTATCAAAAGAACGAACGTGTTTATAATAGGCTGGAAGCATCCTCAGAAGTACTTTAACTTCTGCTTTCTTCATTGTTTTGATCATGTACTTGTCATCATTGGTGAAATAAAAGAAACTTCCACTTTTACCGGGAGATGAAAGCTCCAGCAGTGCATCATCCCCGCAAATGGAGAGCATGTAGTCTCCTGGGTCAACATCAAAGAGCTTGCGCAAAGTCCTGAAAACCAATGGACAGTAGTCCTTCCACCGGAAATCACATGACTGGTGAGGAGGAGTATGCTTTGATCCTTCAGGAGGAAATCTTGTCCACACCTTCTCTTTCGGATCAAATGCTGATGATTTAAGATCCAATGAAGCAGGAGCTGACTGCCTTCCTACAGCATGTCTGATACCCAGCTGCAAGTTGAGCATCAGTTCGTAGTTCTTGTGCCCCTTGGAGATGGTCTCCCCCTGCTTCTTCCCCGGCTTCGGCAGCGTCGGCGCGCGCATACACGAGGGTGTCCGCACCCATGACCTGTCGTTGCGACTCTCCTCGCCGCCGTCCTCCCCCTCAACCAGGCTGTCAATATCGGACGACATGCTGTTCCTCCCTTGGTCAGCTCCGACCTCCGGCGGCCGCCACATCCCTTGGTCGGCGGCGACCTCCGGCGGCCGCCACACCGGCTTCTTCGTCACGGGCTCCACCCCTGGCCATGTCAGCACCTTCTGCGACGGCAGCAGCGACACCGTCTTCCCCTCGGACATCTCCAGCTCCTCGAGCAGCTTCGTGATCACCTCCTTGGGTTCCCGGGGCAACGGCACCGCCGGGCCACCGGACGGCGGGTAGTACACGCCCTTGCCCTGCGTCTCGCCGGACTCCTGGCACCACAGGCCGATGTACATCCCGCCGTCGGACCACCGGAACGTGCCCTGCCCCTTGGGCTTGGCGTCCTCCCACGCGCCGTCGTACCGGTCGCCGTCCGCCCATATCACCGTCCCGCGGCCGTGCATCTCGCCGGCCTTCCACGTCCCGATGTACTCGTGGCCGCCGCGCCAGATGTACCGGCCGTGCCCGTCCTGCAGCCCGTCGCGCCAGTGGCCGTCGTACACGTCGCCGTTGACGTACGCCTGCGTGCCGCGGCCGTGCCGGAGGTTGTTCGCCCACAGCCCGGCGAACGTGTCCCCGAGCTCGCCGATGTAGGTCCCCTGGCCGTGCATGTACCCGCCGGCGAGGTCGCCCTCGTAGATGGCGCCGGACGACCACGAGAACTTGCCGCGGCCAGCCGCGCGGCCGCCGCGCCACGACCCCTCGTACATGCTGCCGTCCGTCCAGAGATACTTGCCGGCGCCATGGGGGAGGTCGCCGCGCAGGTCGCCCTGGTAGAAGTCTCCGCTGGGCAGCAGCTGGTCGGAGTGGCTGGGCTCGCCGAGCGACGCCTCGTCGACGTCGTCGTCGTCGGTGTCAACGTCGTCGAGGACGGAGTCGATGTCGTCGTCGCCGTCTTCGTACTGGTAGATGGTGTTGGAGGTGGAGGAGATGACGGAGAGGCTTGGCGTGAGCGTGACGGGGTCACCTCCGGTGGCCGCCGCCGCCGCCGCACCATCGAAGGTGCCGCCGGAGGGGACGACGGAGCCGCGGAGGATGGTGGAGTACTTGAGCTTGCGGATGCTCGCCTCCCACAGCCGGCTGGCCGGGGGAGGGAGCGGGTTCATCTTCTTCCCGGTCGCCGTCGTGGCGTCCTCCTCCGAGCGTAGCTCAACGTGACAGGGTGGTCAGAGCGAGGGTGTGCATGGCTGGCGATGGATGGGT

Explanation	CPC Score
noncoding (weak)	-0.457563

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0085800.1	11	2059992	C	T
Osa11LNT0085800.1	11	2059783	C	T
Osa11LNT0085800.1	11	2061891	C	A
Osa11LNT0085800.1	11	2061943	G	A
Osa11LNT0085800.1	11	2063301	C	T
Osa11LNT0085800.1	11	2063242	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0085800.1	osa-miR166c-5p	Translation	4.0	15.376	1	20
Osa11LNT0085800.1	osa-miR166i-5p	Translation	5.0	20.746	1	21
Osa11LNT0085800.1	osa-miR535-5p	Cleavage	4.5	16.555	1	21
Osa11LNT0085800.1	osa-miR1846a-3p	Translation	4.5	23.561	1	21
Osa11LNT0085800.1	osa-miR1846b-3p	Translation	4.5	23.561	1	21
Osa11LNT0085800.1	osa-miR1877	Translation	4.5	14.844	1	24
Osa11LNT0085800.1	osa-miR2101-3p	Translation	4.0	12.512	1	22
Osa11LNT0085800.1	osa-miR171i-5p	Cleavage	5.0	16.506	1	21
Osa11LNT0085800.1	osa-miR5152-5p	Translation	4.0	16.388	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0085800.1	11	nan	Morphological trait	Panicle/flower	RM286	RM332
Osa11LNT0085800.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus