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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0085900.2

GGGTCACCTCGCAAGAAATTTTAGGTTGTGTCTAGTTTTCACTAGGTCAGAGCTCATATAGTGGCAGAAAAGCATTACATCAAGCAAGAGAACATTACAAAAGAGTACTGTTTGGAAATCTAACCCAGTAAAATCATAGATACAGCTCCAAAACAATCTGACATCAGTAAACTGCATTCAACCCACATTCTGCTTAGAAATCCATCTTCAACCGGCTCATATTTCTGTCCAAGAAATATCATCTCCAACTTGCATGCAAAAGCAAAACTCAAGAACATTTCCCAATACCTGTTGCTGCTCAAGCAACTCTTCAAGCATCTCCTGCCCTCTCCTTCTCTTGATCACTAAAGCATTTGTTTCTTGTAATTGAAAACCATGTTTCACAAAAGTCATAACTCATGAGTATTCTTGTGAGCATCTGCCTTGCTCATTGGTGATAGTGGTAGCGATATTCCTCCAAAATGACCAGCAACGATTCGGCAATGAGCTACTGTATGTCCAGTGTCCAGAGATGCTTCAGTAATCAGTAGTTCAGTGATTCAGTCACTCCAATGTGTCCAGAGATGCTTCAGTAGTTTAGTGATTAAGTCATTCCAATCTGGCATCCCTCTTCATCTCTTCCTCCCTCTTGATATCCTTCTTCTTCCTCATCTTCACCCTCGGTTTCATCGGCCGATGCTGCAAATGCTCAGCCTGGAAGGCAACCATCGCCCTGAGCACCCCCACCATCGTCTCCTCGATCTCTGCTCCCCTCCCCTCCGGCTCCAGCAGCCGCAGAGCCCTCGCGACGGCCTCCATAGTGCTCACGCACCCCTTGTGCGGCTCCTTCTTCACCACAAGCTTCCCCTCGAACATGCTGTCGCCGTCAACGCCGCAGTCGACGGGCAGCGAGACGGGGACGGCGAAGGAGGACAGGAACGGGAGGCTGGCGGCGTGCATCTCCTTGGCCTGCTTCCATGTCCCATCGAGCAGTAGCAGCGTCGGGTTGGCGCGCGCCGCGGGAGGCGTGGATCGGCACCAGGAAGCGAGGTCGGCGGCGCCCGGCGAAGGGAAGAGCAGGAGGACGGGGTTCGGGATGAGGGGGCCGGAGGAAGGGAGGAGGCGGCGGCCGGGGATGAGGCGGAGGTTGGAGAGGGAGCGGGCGAGGAGGGGGAGGGTGGAGAGCGGGTTGCGGCGGAGGGCGTGCGGGTGGTGGAGGACGACGACGGTGGTGGAGGTGGGGAGCGGGGTGGCGGGAAGGTATGGGCAGAGGCAGACGGTGGACGGGCGGCCGCAGCCGGAGCTGCAGACGGCGCGACCGGGAGGAGTCTCGTCGGCGGTGGCGTCGCCGGCGGCGGAGGGGAGTGGCTCGAAGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.677368
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0085900.2 11 2065066 T C
Osa11LNT0085900.2 11 2064163 T C
Osa11LNT0085900.2 11 2065241 A T
Osa11LNT0085900.2 11 2065453 C T
Osa11LNT0085900.2 11 2066469 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0085900.2 osa-miR5529 Translation 4.5 14.995 1 21
Osa11LNT0085900.2 osa-miR416 Cleavage 5.0 23.433 1 21
Osa11LNT0085900.2 osa-miR529a Cleavage 4.0 10.385 1 20
Osa11LNT0085900.2 osa-miR1857-5p Translation 4.0 11.2 1 21
Osa11LNT0085900.2 osa-miR2103 Cleavage 4.0 7.058 1 22
Osa11LNT0085900.2 osa-miR2924 Cleavage 3.5 17.372 1 21
Osa11LNT0085900.2 osa-miR5515 Cleavage 4.0 21.172 1 21
Osa11LNT0085900.2 osa-miR5519 Translation 5.0 19.692 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0085900.2 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0085900.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus