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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0086000.1

CCACAGTAACAGATTAGAGAAGAACCCCATAAAAAATTTGTGATTACATCCTCCTTATATATCCAAACAAATCAGCGTGCATAAGCATCACAAAAACAAAAATAAATTGCTCACCAAGGAACGAGCTGGACAGATCTTGAGGCCTGAGTTTTTTGGACCCAAACCAACAGCAGCAACGTCAGCCTCACGATTCCCCATCGCCTTGCCTGTTGAATGCTGCACCAGCATGGATTCATCAAAGGGGGCAGCCGAGTAGGGCGTGGCCGCCTGGCCCCTGACCTTGGCGACCTCGGAGCTTGTCTCCACGGCGGCGGCGGAGGGCGCCACACCATGCTCGCCGGCTTCGCCTGGCTGCAGTGAATCGCCTCCGCAAGATTTGCTCCCTCCCCTCGACGACATCTCAGCGGAGGCCGCCGCGCTACGCTCGCCGGCTGAGCCCGGCTGTGGCCGAGGAGTCCTACTCTTGGCCTCCTCTCGCCGACAAGGAGAATCGCTGCCGGCGGATTCACCCCCTCCCCTCAGCGACATTGTGCGCTCCGCTGAGAAGTGGGTGGCACTCAAAAGACTTTCAGCTCTCTCATTTTGAGGGTTCAGCGCCAACGCTGCCTTCAAACACATAACCTCCTTGCCCTTGTCCTGTTTTTGATAAACCAAGGCCATATTAACAATGGCGTCAGATGACAGGACAGGTTTCTGACCATGGAAACTGTGTGAAAGATAAAGCAGATTGAGATTCCTCAACCTGTCCCACTCTGTTGTACTCACATCATTTCTCAGCGCTTTACAGCAAATATCAGCTAGCAAGTAGTTTATGTTTTCCAAAGCATTAAACATGCGCTCACGCAGCGCAGTAACTCTTGCTGCTGTATGGACATCGTCCTCTGCTTTAAACGTAACAGATTCTGTATATGCTATTATACCATTCAAGCTCCAGTCAACACCTTCGATTGGGGTGGAAGAACTCAATAGAAGTTGGACAACATTCATCTGTTTCCTTTTGGCTGCAGCAATGATGGGTGGGTCCTCAAACATGACCTCATCAATTGCGTCTGCATTAGCACCAGAATCAAGTAGAATCTGAACCATAGATTCAGATGAAGTGAGGTCAGCTACTATAGCTTTGCCGATTGGCTTTGAAATCTGAACATTAGCTCCAGCCTGCAACAACGTTTTCATGCTTGTAACTGAACCATTGTATGCCGCACATGCTAAGGGTGTTATACCTCCATCAATAATATCATCCACCTATTAATAAAGACACATTATGTGAAAACACTAGATTCATATTATGTGAAAACACATCATAGCAAAAGACGTGTATTGGTCTTTCTCATAAGAGCTTCAAGAGCAATTTCATCATCCAGTGCTACTGCTGCGTGAATTGGTCCTCCATAAAGAGAATGGATATGAATGTCAGCCCCAAAGTCTATCAATTTTTGCATCGCAGCATATTTGCCAAGAAGAATAGATAGCTGAAGCGGTGTTAATCCAAGATTATCTTTCATGTCAATGCTAGGTTCAAGCTTTGCAAGGACATGGCCAAAATACCCTCCGCTGTTTCTCGGAACAGCAATATGAAGAATCGTCCTACCTGTGCTATCCTTTTTGTCAACATCAATGCCCAAAAACTCCACTAAATGATGAGTAAGAGTAACATGTGCACCCTTGGCAGAGTGATGCAGCACATGCATCCCTTTGTAGTTAAAAGTGCGAAAAAGTGTCCTATATGTGTAAGTGCATAACGGCTTCTTTGCCAATTCTTCGGATGCATCGATAGTTGCGGGGTCGGTACCATTCTCAGCCAGCTCAATAAACCTTAATGCTTCATCGTCATGTTTAGTCAGTTTCTTCTTTCCAGTCAGTTCCCTTGGCGAGCTTTTTGATGACATTGCTAAAGCCAACTAGAGGTCTTCGGCTCATGGGCCTGATTAGTTTGGAGATGAGAGCTGGCTTTCCGTGTTAGGGTTTAGGAATTAGGATGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.1961
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0086000.1 osa-miR812v Translation 5.0 23.053 1 24
Osa11LNT0086000.1 osa-miR5827 Translation 4.5 17.893 1 21
Osa11LNT0086000.1 osa-miR530-3p Translation 4.5 19.955 1 21
Osa11LNT0086000.1 osa-miR1858a Cleavage 5.0 14.832 1 21
Osa11LNT0086000.1 osa-miR1858b Cleavage 5.0 14.832 1 21
Osa11LNT0086000.1 osa-miR1874-3p Cleavage 3.0 12.371 1 24
Osa11LNT0086000.1 osa-miR2871a-3p Cleavage 5.0 9.387 1 21
Osa11LNT0086000.1 osa-miR2871b Cleavage 5.0 9.387 1 21
Osa11LNT0086000.1 osa-miR5151 Cleavage 4.0 18.502 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0086000.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0086000.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus