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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0086200.1

ACAGATCAGCTTTCAATTAATTATACAAATTTGGTTATACAAGCTAATTATACAATTGTTAAAGGTTGAAAAGATCCAAACTAAAATATCCTTATTTGAAAATACAAGAAAAATCTAAAGTGCTAAACTACTAAACTCCTAAGCTCTTCAACTACTAAAACTACAGCTAATAAACTCCAAAGAATTCAAATAACTCCACAGGCAAAAGCTCGAGTGTAGACTAGCCTAGATAAACTTGTCGTTGCCGTAAAATCTCGCTTCCTTCCGATCTCCTTGTTAGCACGTTTCCTCTATATGTCAAATTATGCAAGGGTGAGTACTTATGTACTCAACAAGACATATTATAAATAATTAAAGGTGAGTAGATATGAATAAATAAACAAAAATAAAGTAAAGGAATAATAAAAACCATAAATCATCTTTATCCTCAACTCTTTAATTTTAAAACTACTTATACTTCAGGAGTAGGAATCACCCTGATGACACAACTGCAGAACCGGGAGTATGGCACATTCGAATGATTTAATTCACCTCTGCAGAGACTGTCCAGCTTTACCCACACGATGTCAACAATTTGCAAGGCTAAGGACACCAGAGCCGTTCGAAGGTCCCACTTACTACTAGTTACTACACAGTGGGGTCTTGGTTCATCATAGTGGTCGAACTCTTGCCAGGCCTAGGCAAGGTATCTATATCGTCACACTTTCATGAATCCCACTGTTGTGAAACACTGCCGCCCAAACTCCTTACGCAAGTTCACCCCAAAACCGCTCATAGAGCCACCCAACAGTCTTTCATATAGTGGGACAATGTACTACGCTAAGTCCAATTACTTGATTGTGTGGATGGACGCAACTATGTCATTTCCATGGTATAAGGGGGTAATTATAATCCGGTTAAACCACCCAAAACTTTCCAAACTCCCCACACCAACATCACAAACTTCATCAACATTCATAATCACAGCATTTATAATCTCAACTCATAAATGCCCATTTTAATTGGATTCCTAAGTTTGTAAAGTTGTTTGGAATAGTAAATCACATAAAATGATAACCAATGCTTCTTTCTATGTTCTCATGCAATCATGCTTAAAAGCATTTAACATCTACCCATGAGATGTTAAAAGAGTAAGGTATTATGCATCAAATTAAATATGAAGATCATATCAAGTTTTCTATATGATCAAATTTTAATTATGTCTTTCCTTGCACCTTAAGATTTCTTGCGGCTTTAGCGTAGCCATCTGGGTCCACGTCAGCTCCTTGGATGCTGATAAAACTTGCTGTACGGTTGTGCAGCGGGGCCCACTGTCATATGTCTCTTCTTCTTCCTCCCGTTCTTCTCTCCTTCCTTCTGTTTCTTCTCCCGAGCAACAACAGAGGGGAAGAGGGCACAGGGCACCGGTGCTTCGGTGGTTTAATGGCCTCGACGGCGGCGGACAAGCGTGTTCCCGCTCGCTATGCATCCGGGGAGGTCGGTGGAAGGCATAGGGAGTAAATAGAATGGCCGGAACGGCGGCAGCAAGAGCTCAGCTCTGGCCGGCTATGGTGGTGCCGGTAGTGCTTGTGGCAGTGGCTAAAGGAGAGGGGAAATAGGAAAAAATGGAATCACCTCGGCGAGGCGGAGTTGGTGGCGCAAGGGTTTGGCTTTCGAAGCTCCGGTGAGGGAGATCGGCCGACGACGGCGACGGCCGGACATGGCAAGAGAGAGAAAGATGGAGCTCTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.240648
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0086200.1 11 2149333 T C
Osa11LNT0086200.1 11 2149623 A T
Osa11LNT0086200.1 11 2150246 G T
Osa11LNT0086200.1 11 2150574 A G
Osa11LNT0086200.1 11 2150718 A G
Osa11LNT0086200.1 11 2151009 A G
Osa11LNT0086200.1 11 2151118 T A
Osa11LNT0086200.1 11 2150558 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0086200.1 osa-miR5788 Translation 3.5 15.846 1 21
Osa11LNT0086200.1 osa-miR5337b Cleavage 4.5 21.857 1 21
Osa11LNT0086200.1 osa-miR166h-5p Translation 4.0 24.472 1 21
Osa11LNT0086200.1 osa-miR818a Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818b Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818c Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818d Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818e Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR1435 Cleavage 5.0 21.631 1 20
Osa11LNT0086200.1 osa-miR2092-5p Translation 4.5 17.026 1 21
Osa11LNT0086200.1 osa-miR5152-5p Cleavage 5.0 13.467 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0086200.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0086200.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus