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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0087300.2

GAACCAACTTTTTTTCAAATAGACTTGCAGAGTAGTGATGGCACTTCATGCATGACAGTTCTAGGTGAGGTTGCTTAAGAATCATGTACAAATTCATGCTGCAAGTTTTACTGATGACAATCACCAGAGAGTGCAGTGAAACTTTGGGGGCAATTCAACTCTGATTGAGTAGGATGATACATCCTGAACAGCCAGGGACAACTACAGTCCACAGCTCGGTCATCAAAAAAAGGAGGTTTAACTAGAGATTCATGTAAAACAGCACATAGCCACCAAAGGCGCAATGAACTCGCTCCATGGTAAAAAGTTTTAGGACCACTTCATAGCTTGCGCTTTTACCCCAGGAGAGGGGTCAATGTGCTGCACCATAACTAGAAACAGTAACCACGACACGATCGATCATCATGACCAAGTTCTTGTCCTACACCATTATCAGTGCCTCCTAGGCCAAGGTTTCGCCAACCCAGTGTGCAAAAAACAACAGTCCATCTTCATTTTCAGTCTCTTGAATAAGCTCCTTGGATCGATGCTGTCTGTGGAATGATGAAGGCAAACGGCTCGGATGCTGAATCTTCTAAAATGGAACAGGGAGGACTGCATGTAGGATGGATTTTTTTTCTTTTTGGAGGGTAACTAAAGCATCGATAACTTCGTATCCATCCTTTCGCAGCTCCATTTCTTTAGGACCTTGCAACTTGTATCCAAAATCAGGTACATGGGTCTTTCAGGGGAGTTAATCACAGGATGGGATGGGCCTTTGTCAGATGAAGCCTCGCTTTCTACCACTTGGCTTGTGGTTAGCGATGGTTGATTATCATGATGTATATCGCTCACAACAAGCGCCATTTCTTGATCCAGGGCTTTACATGGCACAATATCTAAGGCATTCTGTTCTGGGACATCTTCATCTGCCAGACATGTCGTACAATTCTGTTCCACTAAGGCATCTCTTTCAGCCATATCTTTACTGCGTTTGAACACTCCCCACAAATAGTGTTTTCCTTGGAATACCCGATATTCAGCTGGAAGTACAACAGAAGGGAAGACTAGCAGCTTGGCAAAACTAACATCAGTTTCTAGAACAATATCATAATCAATGACATGCTTCACTAGGTCATCAAATTCTTTATTTGACCTCGTATTCTGTGAAAAGAAAAATAAGCCAATACTCTCAGCACTAGGTACTGATGCCTTCTCCCAACTCTTAGGCCAGGCTTTCAACTTAGGGAGCTCTGTCACTTTCATTATTTGTGGCAACGACATAGATAGTTCACACACCTTCTTGCATGCTTTGTTTGAGAAGTGTGCACCCACTGGAATGTAGTTTGTACCTATCTTCATGATTCCACATTTTTTCCTGCGACTTCAGAAGCTCCTCTCACGCATCAAGCCCCGGAACCGACGCAAGAAACCCGCAGATCCCTGTCAATCTCTCTCCTCCGACCCTCTTTCCTCCCCATGGCGAGAAGCCAAGAAGAACAGGAGCGCGGAACCAGCGCGGCTGCAGCAGCGGAGAGAAGGAAACG

Coding Potentia
Explanation CPC Score
noncoding -1.11151
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0087300.2 11 2909797 T C
Osa11LNT0087300.2 11 2911631 G A
Osa11LNT0087300.2 11 2912587 T A
Osa11LNT0087300.2 11 2914753 C T
Osa11LNT0087300.2 11 2914875 A G
Osa11LNT0087300.2 11 2915010 C G
Osa11LNT0087300.2 11 2915144 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0087300.2 osa-miR1437b-5p Translation 4.0 12.463 1 21
Osa11LNT0087300.2 osa-miR529b Cleavage 4.5 21.423 1 21
Osa11LNT0087300.2 osa-miR1854-5p Cleavage 4.5 19.313 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0087300.2 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0087300.2 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0087300.2 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus