© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0006800.1
TTTGATTCTGTCATTATATACTCATAATTCATATACTATCAAACATGAAGAAACACGCATATATAGATATAGGAGCAACTGCTGCTGTAGGTAATTAAAATAACCAGGGGTTTTTTTTATGCCAATTGGCCTTTTGCATGCTTTGGTAGTTTCTACGGAATCATGATTGATCACAGACGACACAGACGAGAGCTCCAGCAAGCCAGCCATGCCATCCATTTCTTTCCTTTTGGCCATGCCTTGGTGATCTCAAATGCTTGTATTTCCCCCTTGTCTTGTTCCAGGGAATCCTCATGATTTCATGGCAGCAGAAACAGGAAACAATCCCTGAATATATTAAAAAAACACCATAGACCAAGCTTGAAATACTCCATCTTTTGAAAATATAAACATTTTTAGGTTCTTCAGCAAAAACAAAGGTGGAGGGAAAAAGAATTCTCTTCTAGTCACTTCAATTCAGTAGTCAAATTTTGATATTTGAATTGCTTATAGTATTCCTTTTCCCAAGCATCTCATTGGTTAAAAATGTACATTGTTTGTGCATTAGAATCAGTGGCCTAGAAATGTTTTCATATTTTGGATGGAAAGAGTATAATTATATTATTAGCAATAGCCCCCATTTATGTGTCATACTTAAATTTATCCCTCAAACATAGCTTATCTAGTTTATCTACTCCATTGAAGAGGAAATGATGTCAATGTGCATTTTCAGAAACTAAAGAAGAAGATAGAGATATTGGAGCAGTTTGTGTTTGGCTTTCATGCATGTCATTGCTAGGTATATATGTGTAGTCGTAGCAAGTTAGCCAAGAAATGGTTGGGCAGTGGGTGGCCCTGCAGAGTCCGGCAAGATCGGCACTACTGCTCACATGTGAGTGACCATCCATCTCTCACCATGGATGCATGATGATGGGGTACTACTGCTGCTGCTTCTGCTGCTGAGCCTCAGCCTGGATTGCGACCGAGAAATCCAGAAACGGGGCGGAAGAATTCAGGGAGGGGAGAACGCAGCGCCAATCCTCGCCCCCTGCCGCTCCGCTCGCCGCCGGCGCTCGGCGGCGTCACATCGATCTGGCATGCCCCAGGTGATCTCCCATCTCTGAATCTCTCCCGATTCCCAATTCCCAATCCCCAAACAACGTAATGTGGCTAGGGCTAACGGGCCAGAGGAAAAGCCATGGATTATTATGGCGAGATGGCGATGGAAATGTTGTCTTCGCCGTCGCCGGCGGCGGCCGAGCGGTGAGAGGACAGGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0006800.1 | 1 | 5103374 | T | G |
| Osa01LNT0006800.1 | 1 | 5104196 | A | T |
| Osa01LNT0006800.1 | 1 | 5104605 | T | C |
| Osa01LNT0006800.1 | 1 | 5104635 | T | C |
| Osa01LNT0006800.1 | 1 | 5104758 | A | G |
| Osa01LNT0006800.1 | 1 | 5105108 | T | C |
| Osa01LNT0006800.1 | 1 | 5105121 | T | C |
| Osa01LNT0006800.1 | 1 | 5105164 | T | C |
| Osa01LNT0006800.1 | 1 | 5105325 | A | G |
| Osa01LNT0006800.1 | 1 | 5105597 | A | G |
| Osa01LNT0006800.1 | 1 | 5105664 | T | C |
| Osa01LNT0006800.1 | 1 | 5105761 | A | C |
| Osa01LNT0006800.1 | 1 | 5108620 | A | G |
| Osa01LNT0006800.1 | 1 | 5107802 | A | G |
| Osa01LNT0006800.1 | 1 | 5107819 | A | G |
| Osa01LNT0006800.1 | 1 | 5104639 | T | C |
| Osa01LNT0006800.1 | 1 | 5104704 | A | G |
| Osa01LNT0006800.1 | 1 | 5105995 | A | T |
| Osa01LNT0006800.1 | 1 | 5106758 | A | G |
| Osa01LNT0006800.1 | 1 | 5107106 | T | C |
| Osa01LNT0006800.1 | 1 | 5107167 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0006800.1 | DTM_#DNAt_MULE_japo_Os0243 | Chr1 | - | 5107188 | 5107956 | 768 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0006800.1 | osa-miR812r | Cleavage | 5.0 | 14.512 | 1 | 24 |
| Osa01LNT0006800.1 | osa-miR6255 | Cleavage | 4.5 | 18.816 | 1 | 22 |
| Osa01LNT0006800.1 | osa-miR160a-3p | Translation | 5.0 | 16.525 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR160b-3p | Translation | 5.0 | 16.525 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR160c-3p | Translation | 5.0 | 16.525 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR395t | Cleavage | 4.5 | 22.118 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR395a | Cleavage | 4.5 | 22.118 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR169d | Translation | 5.0 | 14.512 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR166i-5p | Cleavage | 5.0 | 16.911 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR2871a-5p | Cleavage | 4.5 | 16.833 | 1 | 24 |
| Osa01LNT0006800.1 | osa-miR5071 | Translation | 4.5 | 13.921 | 1 | 21 |
| Osa01LNT0006800.1 | osa-miR5340 | Translation | 5.0 | 17.181 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0006800.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0006800.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0006800.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0006800.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0006800.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0006800.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0006800.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006800.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0006800.1 | 1 | sp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Osa01LNT0006800.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0006800.1 | 1 | dn1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0006800.1 | 1 | gn1 | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | gp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | gw1a | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | qSSB1-1 | Morphological trait | Panicle/flower | RG532 | G359 |
| Osa01LNT0006800.1 | 1 | qLS1-2 | Morphological trait | Shoot/Seedling | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | qSS1-2 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | qSW1-3 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0006800.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006800.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0006800.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0006800.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)