© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0007000.1
CTCGCAAGTTGCTGATGCAGCAGCATCATCCACTGGGTTAGAGGTATGGAAGAACAGAAGCAATTCTGTCAGATTTACATGGCAGTTTCTTCTGAAACAAGTGGAATCAGCCAGAAGCTGCAACTAGCCAGAAAAAAAGAAGCTTATCATCTTCATTGCAACAAATGCATTTCTAAATGTAGTCTGAATCTATACATCAACAGTTCCTACCAAACAACTAATCATAACTCAAACCAAAAAGAAAACAAAGAAAATCACAAATGAACTCAAACTGACAAGCTGAAAAAGAGACGACATCACAAATCCAAATGCAGACAAACCTAGTATGGAACCAAATCTGAGCTCATCTCATTAAATCCTTGAATACTCCACAGCTCAAGCTCTGCCCTGCTACTATCCTGATTTCTGAACTATACAGCCTTTTATCTCCACATGAGTAATGTACAGAAACTAGGCCTGAAAACTCTCTATTTCCATTCAACTGAATATTTATCTTCGCAAGATTGAAAAGGGAACAGAAAAAAACCTCACCTATTACTACACTGCGAGCGCGTCTCAAAATCTGGTGAGGCACCATGCTCACTCATACTCCCTCTTGATAGGCTTCGCAATCTCTGCCAGAACTTTCTGTTCTTGCCTGTCATCAGTGGACCTGAGCTGGACTGCTTTCGGAAAGAACCTGAATCCGCAGCGGGAGTGAAGACAGGGGTTGAGCCAAACATCTCAGATAACAGCACCCTCTCAGCTTCCATGCCAGTTACATCATAGATTGCTGCAGCTTGTGCCGCCAATTCCTGGCTGAAACTTCCTGATCCGAGGCCCTCATCACCGTCACTGCAAACAAGTTTTAAGGCCTGCACTACTTCACCCATGCTCGGGCGATGCGCAACCTCAGGTTGTACACACATTGATGCGATGGCAGCTGCTTTTGCGACATTGTCCAGGGGTACGTTAGGGCCAAGAAGTGGATCAACAGCTTGACGTAGGCTTACCACATTGGTCAGAAGCGGGCGAGCCCATGAAACTAGGTTTTCTTGCCCCCCGGGCCTAGACATGTCCACTGGCTTTCTACCGGTGAGGAGCTCAAGCAACACTACTCCATAGCTGTACACATCGCTCTTGACAAGGAGATGTCCTGTCATGGCATACTCCGGTGCAACATATCCAAATGTTCCCATGACACGAGTGGAGATGTGCTGGTTCCCCTCCCCCCTTGCAGTCCTGGCCAGTCCGAAATCAGACACTTTCGGTGTGAAATCATGCTCCAATAGGATGTTGCTTGACTTAAAATCACGATGAATCACACAAGGGCTTGAATCTTCGTGTAAATATGCAAGAGCTCGTGCAGCCCCCAAGGCTATCTTCATGCGGGCATTCCAATCGAGTGGTGCTGTCTCAAGATCCACTCCATGCAAATGGGATTCTACACTGCCATTCGGAATAAGTTCATAAACCAGACATCTTGCGTTCTCCTCTACACATATGCCTAACAACTTGACCAAATTTCGGTGATGCAAGCGTCCCAGCATCTCAACCTCAGCCAAGAACTCTCTCTCGCCTTGGCCATCATACCTCTTCAGAACCTTTACTGCAACCCTGGTTCCATCTTCAAGCGTGCCCTGGTAGACACATCCGAAGCCACCCTCTCCAAGTACTGTTGAATCATCAAAGCTGTTTGTGGCCTTCTCAATCTCAGCAAATTTGAATGTCTTTGCCTGTCCTGCATATGTTGCGATACTTGAGCCCAATGAACCTGATGGACCTGATGGTGAACTATAGCGACCAGCTAACAGTGTTTGACCTGTACCAGATGATCTGGAAAATTTTGGAAGTGCGCTATGTGGAAATCTTTGAGCCAAGCCATCCGAACCCCTGAATCTGATTATCAGCAACCATGCAGCTAGAGTGCAAATAATCAATGCTATAACAGTAGACAAGACGGCAATAGCAATTAGGCTGCCGTTGACTCTTTTTTTGGGCCTGCCTACATCAACCCCGAGAGGCTTCATTGCCCTTGCATTTCTGTTGTTTCCAAATGCCCCGTCACCAACACTTTCCGGTGCTGAAGGTGGAGAAGGAGGAAGCCCTGGATATACAACATACAGAATCTCGTAGTCCCCAAAAACTGATGGTTTTAGGGAAATTTTTTTGCTCCATAAGTTTTCAAACGTTAAAAAAGCAGTAGCATTGTCAAACTTCACTTGCATTGGTACTAGGTCAACAAGAACTACTGTCTTGTCAGGCTGATCACCAGCTACATTTGCACCCATAACACGAACCTGTCTCTGTGCCATATTTACCCCAGATGACACTTCTTCCGCAAAATCAGATACCAATGGAAAGAATGAATACAGATCAACACTTAAGCGGACTCCAACTTTGATTGGTAGAACACAAACACATGGGGCTCCCGCAGGTGGATCTGTTAGAGGCTCTGGGCATGCTAATGAATTGCAATCTAGATTAGGCGGTGGTGGAGGTAATGCCCAAATAGGATGGGCTGATGGTGCTTTCGGCCCTGGTTGGGGAGGGATTGGTGGCATGGTTGGAGAAATATGAGGCCTTTTGTTTGAATGAGTGGGAGTCCTTGATGACACTGGTGCAGAAGATGGAGAATACGCAGGCAAGTTCGTATGGCCTCGAAACATAGGTGGAGGTGCATGGTGCTTTTGCCTTTTAGCCCCAGACTGCCTTGGAGCCCGTGAGTTCTCAGGACCTTGAGCATGAGATGGTGGATAAGATGGGGCAAATGGAAGGTGTTCTCCTTTCTTCGGTGCCCCACCCCGACCATGGTATCTGCTAGAAGTTGCTGGTTTAGGAGCAGCTACTGTTGAAGGGGGTCGGTCATGAGAAACTGATGATCCATTCTTTGGGACTGCTGGCATATTTGTGTTCTGGGGCAAAGGAGTTTCTGCAGGTGCTGATCCTCTAATTGGCGGTTTGTGAGCTGTGCCAGTTTGACTACTGGATTCCTTTGGTGGCAGTGCACGTGGAATATGACTATTCTTATGGGGAGGTGATGTATTTGCTGGGGGCACTGAGTTTCCATTGCTATGGTCACTACTTGGTGCCAGTGCTTGCTGACGTGGTGCTTGTGCAATAATAGGTGGTGCAACTGGAGGTTTTACACTTTCTCGCGGAACTCCTGAAGTGGAAGGAGGAATGGCAGGTAAACTTCTTTGAGGTGGTGGATACGGAGGGACGCCATTCCCTGATCCAATTGGTCTGCTTGGTGGATTGTTCACAGAAGGAGGTTGCACTATCGGTAGATTAGGATTCCTGGCCACAGATGGAGCAGGAGCCTGAACAGAAGGCAACAAAGCAGGTGTCCCAGGAAGCACTGGTGCAGGATTTTCAACTGCAGCTTGCGGGGGAGCTACTGGCGCCACATGAGTGGGAGCAGGAGGCGTAAGCTCAACTGGAGGAGGCGCATTATATTCTTTAGGGGGTGTTACTGGAGTAGGCGCATTTTGTGGTCGAGTGGGAACAGCTGGGCTGACAGCGCCCTTCGCCACAGGAGGGCTTGCTGATGGAGCAGAGGGTGCTGTTGGAAGAGTTACTGGACCGAGGGCGATTGTAGGTTCAGGAGGGCTAGAAGTTTGATCTTGAGCATCTGGCGAGTTAGCGACCACAGGAGAAGGACCCAGATCAGTACCTGTAGATCCAAGAACCGAAGCGAGAAGAAGCACCGCGCAACAAGCGAGCGACCGCATCTCGCCCTTCCTCCCCTATTGCGCCTCACACCAAGAACAGCCAACTCAAGAACAGCCGCGCCAAAATGCGAGAGAATCACAGATCACAACCATCTCGGGTGGCGCGCGGCGCCGCTCCTCCTCCCGCAGGAAGGCGACGGGGCCTGACCGCCATTTTGGCACCACGCCATGAGCAGCCACACTCCCATGTGGGGAGGGAGAAGAAGAGGGCAATGAGGAGGCGGCAGAAGAGGGGTTAGCCAAGCAAAGCTTGTACTAGTACCACTAGTGGTTACTGGTTAGTACAGTACAGTACACCACAAGGCAGTGGACTAGTGGTAGCTAAGGAATAAATTAGTGAGAAATTAGCAACAGAAGAAGAGGAGATTAAGAAGAAGGAGAGAGCTTTGGGTCAAGATGCAAGAACCAGCACAGTAAACATTCCTTGCTTGCTGCCCCTGCACTCCTCCCTCCACCACTACCCAGATCATCATAAGCTGATGAAAGATGAAGGATTAACCAACTAATCAGGAAGAAAGAAAGAACAAAGCAGGAATCTTTGCTTGGGGCTAAGTAAACTATTCACCCCCAAGAAACACCCTCAGAGATGCAAGCTCGTCCTCTCTCTCATGCATCAGAGTGCCTGTCTGTCTGTCCCTCTCGCTGTAGATTCTTGGTCTGTGTTGTGGGGGGTCACTCTCCTCTCCTGCATCGACAGCCTGGTCCCCGTTCTTTCTCACTGATTACTTTATTTACTGTTGCGAAATCGGTGGGTTGGATGGGATCGGAGTATGCACAGCAGCAGCAAGAACCCTAGAAATCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCCACGGCTTTGTCGGTTGATCACGAGGGCGCGTCGACCATCACCGATCACCAAGCACGCACGGCTGCTCCCTCCCAGCGTAGTAAGTAAATGAGCAGACATCGGATTCTGGCGTTTTGATCTGCATTTGCAATTCGAATTTGATTGCAGAATGTGATGGTGGTGGGTTTATCTGAATCTGAAACCCATCCTAACAGCCGATCTGCGTCAGTTTGCGTTTGGTTTCGTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0007000.1 | 1 | 5110556 | T | G |
| Osa01LNT0007000.1 | 1 | 5110990 | G | C |
| Osa01LNT0007000.1 | 1 | 5111745 | A | G |
| Osa01LNT0007000.1 | 1 | 5112154 | C | T |
| Osa01LNT0007000.1 | 1 | 5113365 | C | A |
| Osa01LNT0007000.1 | 1 | 5114765 | T | G |
| Osa01LNT0007000.1 | 1 | 5115708 | A | G |
| Osa01LNT0007000.1 | 1 | 5115788 | C | T |
| Osa01LNT0007000.1 | 1 | 5116475 | A | C |
| Osa01LNT0007000.1 | 1 | 5112569 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0007000.1 | osa-miR5806 | Cleavage | 4.0 | 12.01 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR172c | Cleavage | 4.5 | 11.832 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR1846d-3p | Cleavage | 5.0 | 22.036 | 1 | 20 |
| Osa01LNT0007000.1 | osa-miR1852 | Cleavage | 4.0 | 11.584 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR1852 | Translation | 5.0 | 21.295 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR1855 | Cleavage | 4.5 | 22.349 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR1862d | Cleavage | 4.0 | 9.541 | 1 | 24 |
| Osa01LNT0007000.1 | osa-miR2106 | Cleavage | 4.5 | 17.07 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR5522 | Cleavage | 3.5 | 19.011 | 1 | 21 |
| Osa01LNT0007000.1 | osa-miR5820 | Cleavage | 4.5 | 23.077 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0007000.1 | 1 | qFLL-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007000.1 | 1 | qFLP-1 | Morphological trait | Culm/leaf | RZ543 | RG532 |
| Osa01LNT0007000.1 | 1 | nan | Resistance or Tolerance | Lodging resistance | R1944 | C955 |
| Osa01LNT0007000.1 | 1 | ph1.1 | Morphological trait | Dwarf | RM220 | RM272 |
| Osa01LNT0007000.1 | 1 | nan | Morphological trait | Root | RM7383 | RM243 |
| Osa01LNT0007000.1 | 1 | nan | Morphological trait | Root | RM7383 | RM23 |
| Osa01LNT0007000.1 | 1 | Rf3 | Physiological trait | Sterility | nan | nan |
| Osa01LNT0007000.1 | 1 | ppp1.1 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007000.1 | 1 | prg1.2 | Physiological trait | Source activity | RG140 | RM243 |
| Osa01LNT0007000.1 | 1 | spp1.2 | Morphological trait | Panicle/flower | RG140 | RM243 |
| Osa01LNT0007000.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007000.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0007000.1 | 1 | nan | Physiological trait | Source activity | RG532 | RG472 |
| Osa01LNT0007000.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Osa01LNT0007000.1 | 1 | sp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | dn1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | qTNSP-1-1 | Morphological trait | Panicle/flower | RM1 | RG532 |
| Osa01LNT0007000.1 | 1 | qSS1-2 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | gw1a | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | qLS1-2 | Morphological trait | Shoot/Seedling | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | gn1 | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | gp1a | Morphological trait | Panicle/flower | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | qSW1-3 | Morphological trait | Seed | G359 | RG532 |
| Osa01LNT0007000.1 | 1 | qSSB1-1 | Morphological trait | Panicle/flower | RG532 | G359 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)