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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0087800.1

CTCTGCTTTGTCTGAAACTCACTGGAGCAATGCCTTTTCAGTTTCAGTTGTTATGTTGTCTCAAGCTCTGAACAATCCTCAGAAGACTTGATGTTCATCATGTAGCATTGCTCAATACTTGACGCAATTTAGTTGACATGAATACTACTTCCGACTTCCAAGAAAATGATTGCTAACCTGTTTCCCCACAACAATATCAGCTCCAAAAGTGACGTTCCAGTATTACTGCTTCCCATGTCAACATTTCTTGACTGGTGGAGGCTTTCCGTGGCGTGGCCATCGGAGAAGGCGAAGAAGTACGTGCACGGGGAGACGGCGTCCTCGCAAAACGCCACCGGGCGCACATCGCCGTCGCCGCCGTCAACGCCTCCTCCGGCAGCGGCAGCTGGGACGCACGCACTCAGGCCAGAGACCGCCAGGGGTAGGAGCAGGCCCTCCCGGGGAGCAACCGGAGGACGAGCGATGCGCGAGGGCGGAAGAGGAGGAGGGATAACCGGAGGAGGAGTGAGGTGGGAGGGTGGGAGGAGGCAACCGGCGGCGCTCGGAGGCGGCGGCCGGCGGAAGGCGAATGACGAGAGACGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.1457
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0087800.1 11 3653578 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0087800.1 osa-miR156f-3p Cleavage 4.5 12.222 1 22
Osa11LNT0087800.1 osa-miR156h-3p Cleavage 4.5 12.222 1 22
Osa11LNT0087800.1 osa-miR156j-3p Cleavage 4.5 12.222 1 22
Osa11LNT0087800.1 osa-miR156l-3p Cleavage 4.5 12.222 1 22
Osa11LNT0087800.1 osa-miR2924 Translation 5.0 22.93 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0087800.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0087800.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0087800.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus