>Osa11LNT0087900.1

CCACAATGAAAATATGTGAGGAGTATATTAACAGAAAGTCCTACAAAGTATTACAAAGAATTATCCATCACAGAAACATATGCTAGTATATATGTCAAGACAAAACTGTTTAATTATTGCAAAAATGTTTCACCAACAAAAACTTCTTCTCTGTTGGATTGATGAAGCCAGATACGAAAAGTTGGACAAAATTGCTCTGAAACGACTTGGATCTATCGTATACACTTCTGTCCTAACTGACAGTACAGTTACAGTAAATTTTGAACCCCATTTTCATGTTTGGACAAAACTCCTATAAGTTTCCACATTGAACCTCTCTTTGGGAAAAAAAAATTCTATCAAAACATTTCAGGCATTCCATGATGCTGACCGTCGCATGGTCGGCTTCACCGGCCGGTCTTCCTCCATGGAGATCATCATCAGCGTCGACGGGTCCTCCAGCATCATACGGGCTACGAGGTAGCCAGCGATGGACCATGTCTGGAACTTCCTGGCCTGCTTGCCGATGAACCGTCCCAGCTTGCCATCGTAGTACTCTGGCCAGCCGTCCTTCAGTAGCCTGGACTCGGCGAGCTCAATGGCGCGCTTCGCCATCTGCGGACGCCCAGTCTTGATGCAGGCTGCTGTCAGCAGCCACAGGAGAACTGCAGATGGGAGAACACACACATAAACGTTAAGATCTTGGAATGAGGATTCAGGTGACTTTGGTTGTGAACATCAGAATCACATTTCGCCAACTATCTAGGGAACACGAAGATCGGATCAACTTTAGGAAAAAAAAAAGTGCCACACTCAACCCTCAAAGGGATCTGTCGGTTCTGTTCAATTTGATGAAAACAGATGAAGAAGTCAAAATTTCATAGCCATAAGCACCTTAGCTACCCCCAAAAAGTTAGTTTTTACAGCTTCTGTATGACATTAAGGATCTTACAGTATAAGACTTGATTAATAAAAATTATTAGAACAAAGTCATTATCAGAAGAGGTGAATGTTGAATAGTATTATGTGATCGATTTCAGAATAAACTTTAGTTTACCTATTTATTATTGTGTGTGATGAATTGACATCTAAGCTATCAGCCATAATATTGGACATGACTAATTTTTATGAAGAGTAATGCATAGTAAGGATCAGCAACAGAATCATCTCAAGTTAGCACAGTGCAAAAGGAAAACTTTAACCTGGCCATGATCCTCCATTGTGATAACTCCACCGGGTGTTCTTCGGGTCGCAGCCAGTGATTATTCTCCATTCATGGTTCTCAATTGCAGGGTAACATATCTTCAGAGGCATCTCACCAACTAGCTCTTCCCACCGCTCCTCAATCAGATCCATTATTGCCACTGATTGCTCTGGAGTAGCCAGAGATGATATAATGGCAATGCAATTTCCAAGGGCAAACCACCGAAAGTCCATCATAGCTGGGCTCACGTTGCCAAGGAAGTAGCCTCCCCGGCATGGCATGAAATCAAACACCCAGTCAGGGATTGAATCCGGGATGACATTGAATTTGTTCACAGCAGTGTGTGAATACTCCTCTGTTTTATATCTGTATATGTTATTCAGGTGTGGGAAATCTAGCCAGAAGTAATTCCTCATGTGGTAGGTTAGAGCATGTAGCCGTTGCCCTATCTTTTCTATGAAATCCTTCCCTTCACCATCTGGCTTAAGCATCTGCAGAGCACATCTCAACGCCATGTAGAATAGAGCTTGGATCTCAATAGGATAACCATATATACCCATTCGACGATCTATCATTGAGCAGCCATCTGTGCAGAGCAGAGTTGGGAAGGTATCAAATCCCTCAGATAAGCATAGGTTCAGTATCAGCCTCATGCAGTTCTGACACTCTGGTGATTCTGCCAAACTAGTATCTGCCGTATACTTTGTATATGCCCGGAGTAGAATAATCCACCAAAATCCAGAGTCCACTGGAGCCACCCTCCCAATTGCACTCTCACCAAAATCTGCAACTAAAGTTTCAGTGTTTCTGTTCCGATTACGATCCACCTTGAAACTTGCAGGCATCGCTCCTGCTCCAAGCTTGAAACGGTCTACCATTTTCTCCGAGCTTTGCAGGTGGAGTGTTTTCAAGAGGAAGTTTTTCACTATATCAGTCTCATTATTCATTAGAAAAGCCAATGCACTTGGAAAAAAATCTCGCACAAAAACCTGATCATAATTGAGCACCTCCTCGGACGCATGGTCGACGGCGGCAATCGTCCCAACCGGCTGCCCCCGGAAGTACACCACGGACTTCCTGAGAGCCTCCCACGCCTCGTTCACGAGCGGGTGGGGATCACCGAGCGTCCCCAGCGAGAAGGGCGAGTCGAAGCCCGAGGGGAACGCCGGGGAGTGCATGATGCTGTCGAAGCCGTCGTTCTGGCGGTGGGAGAGCTCACTCCACGACTGCTCGTCGAAGGACCTCTTCCTCTCCAGCGTCAGCCTCGGCTTGTCGATGAGGAGCCGCGAGAGATCGAGGTTGATCTCCGCCTCCGAGGCGATGGAGACGTGGGACGACACCCTCTTCATCCTGCTGATGACCTCCTCTTCTTGAATCCGAAGCGGCGGCGGCGGCGTGTTCGCCGGAGAAGAATCGACGAGGAGAGAGAAACCAGCCAACTAATAAACCAACCAATGAGAGCGTCGCCGTTCACCGATCTTGCGGTCTAGATCCAAGCGCAAGAACGGCAAGATCTCCTCCGGCGGCGGATGGGATCAAGAGGGGGAGGGATCGTGGAAGGAGGTGGTGGTGGTGGAGGGAGGAGACTATCC

Explanation	CPC Score
noncoding	-1.22616

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0087900.1	11	3741700	C	T
Osa11LNT0087900.1	11	3743191	A	T
Osa11LNT0087900.1	11	3739732	G	A
Osa11LNT0087900.1	11	3741544	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0087900.1	osa-miR5822	Cleavage	4.5	16.147	1	21
Osa11LNT0087900.1	osa-miR166i-3p	Cleavage	5.0	13.402	1	21
Osa11LNT0087900.1	osa-miR426	Cleavage	4.5	16.425	1	21
Osa11LNT0087900.1	osa-miR1425-5p	Cleavage	5.0	12.894	1	21
Osa11LNT0087900.1	osa-miR1873	Translation	5.0	21.11	1	24
Osa11LNT0087900.1	osa-miR2102-5p	Cleavage	3.5	24.658	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0087900.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0087900.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0087900.1	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus