\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0088200.1

GGGTGGGCAGGAGAAGCGCCGCTGCAAATTTCCAAACCTTGTATCATCATCATCAGCTTTGGATACAGAACCAGGCATAACCTGGGATCATACACGTGGTTCTTGGTGTGGAGAAGTTAGAGAAAGCTTCCTGCTGAAGCATGAATTTTTCAGTCTTCATGCTGTACATCATCAGCATACATGAATGCTGTTAGCTAGGCTTAAAGAATTGAGGGAGTTGAAGGGCGACAATCTGTCAGAGATACCCAGGGCACTGATTGTTCCATAGAAATGATTCAGTGTTTTGAATTTGATAGCAGGTCGTTCAGCTCAGAGACAATTGCCATATAGCAAAACTTGTATTGATCCTCTGTTTGGACCATTCCAGGTCGCTGGGATCTAAATTTTTTGACAGTTTTAGAAAGATCCAAAGCAGACATGTCACCAAGTAAAATCCTCTCTATAGTGTTGTGGATGGTGATATAAGCACCAGTTCTCCCAATACCTGCACTGCAATGTGCTACTATTGGATGCTCTTTTGGAATGCCATATAATCTTTTCAAAATTTTTCGTACAAAAGCACTGTCATGTGGCACCCCATGGTCAGGCCAGTCAGAATACAGAATGTGGAGAACATGGCGAACTGTAAGTGACTCATTCTGCTGTACCTCCAAACCACGCAATTCTAAGACACCATCGCATTTGAACTTTGTGATCTTAACACTGAATTTTCCATAATCCCTTTCTTCTCCTTCGTTCGTTGGAAGATACCTGTCACACTTGGCACCATCAAATTTAGTGACCATAACAATCACAGGACACTGGTTTTCGTAGACCATCTGCCAGAAATCCCCAAATGTCTTGACCAAGGGACCTTGAGTGGAAATGAACTTTGTATGACTTTGACCTTGGTCATCAGTCTCTATAAGGCTTGCATTGATGTATTCATTGCTTGAAGGGTGATCACTTGCTGAGGGCTTTAAACGTACCCGGGTTTCATCAAATGGCATGACATCACTGTAGCGGTTTTTTTCCCTATTAGCAGGATTTTGAGCAGCAGTAAATTTTCCCGTCTGGAATGCTGTCTGTATGTCCGGGAGAGCATGGAATTCCTTGGAAATGTCAATGGCAGCTGTTTGCTTGAGCTTCTTCTTCAACACCTTGAGCGCCTCCTTGCAGTACTTCACCTGTTCCCGCGTGAGCGCCGGCCGCGGCGCCGGATCCGCGAAGAGGACGAAAGGGTCAAACGGAGCGGGCGGAGGCGATCCAGACGAAGGCAGCGGGAGCCGCGAGCCGCGTGGTGGAGCCGAGGTGTTGGCTTGGCGGGGGCCGCC

Coding Potentia
Explanation CPC Score
noncoding -1.16397
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0088200.1 11 4005511 A G
Osa11LNT0088200.1 11 4004702 G T
Osa11LNT0088200.1 11 4004958 G A
Osa11LNT0088200.1 11 4005276 C A
Osa11LNT0088200.1 11 4006430 A G
Osa11LNT0088200.1 11 4006997 A G
Osa11LNT0088200.1 11 4007846 G A
Osa11LNT0088200.1 11 4008653 T C
Osa11LNT0088200.1 11 4008705 T C
Osa11LNT0088200.1 11 4008955 C G
Osa11LNT0088200.1 11 4009190 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0088200.1 osa-miR5815 Translation 3.0 17.725 1 24
Osa11LNT0088200.1 osa-miR419 Cleavage 4.0 19.457 1 21
Osa11LNT0088200.1 osa-miR812g Cleavage 5.0 18.458 1 24
Osa11LNT0088200.1 osa-miR812h Cleavage 5.0 18.458 1 24
Osa11LNT0088200.1 osa-miR812i Cleavage 5.0 18.458 1 24
Osa11LNT0088200.1 osa-miR812j Cleavage 5.0 18.458 1 24
Osa11LNT0088200.1 osa-miR2099-5p Translation 4.0 23.031 1 22
Osa11LNT0088200.1 osa-miR393b-3p Translation 4.0 19.36 1 21
Osa11LNT0088200.1 osa-miR5503 Cleavage 4.5 18.617 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0088200.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0088200.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0088200.1 11 nan Morphological trait Seed RM332 RM229
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus