>Osa11LNT0088300.1

TCGAAACCCTAGCCACTACTGTTCCCCCGTCCCTTCTCTTCATTTCCCTTGCCCTTGCGCCGCCGCCGCTTTGCCTTCTCCTCGCCGGCGACGACGGCTTGCCCCTCGAGCTTTTTTGCCGTCCATCACGCGAGGGTGGACGGGGGAGTTAACTTTTGGCTGCCCTCTACTGCCATCCAAAAACCCTAGCCGCACCGAAGTCGCCGCCTCCTCACAAACTCCTCTGCGCGTTCTCCTTCGTCCAGGCGCTGCTGTGGTCGTTGGTGAATCGTCGACGCCGTGGTGAACCTGCGGAGGGACCAGACCACGTGGGGCTCGGGGCGAGGTTTGGCCGTGACGCCTGTCGTCGCTTCGTCGCCCTCCCCCTGCCCAATCTCTCCATCTCTCTTCCCAGTTAAGCAGGGAGAGTGGTCATGATGCAGAACGAGGGCGAGAGGGTCGATCTGCTGGCCCTGCCACTCGATCCGTTCAAGTAGGGGTGGTGGTGATGGAGATCAACCAGGGCTGCTGGTGATGGAGAACGACAACGAGGTGATCGATCTGCTGGCCTATCGCTAGATCCGGTGGGTACATGCACTCAAGCTCGCCATGAAGCCGATGCAATCCTTCTCCATCTCCACAGTGGGTTGGCGCCCTTCTGCTCAAGTTTGAAGCTCCGCTGCCGTGCGGCGCCGACACTGTTTCGCAATTGCAGATCTGGCCAGCAACAGTGGTCGGAGGTATGATATTTTGCATGCCTCTTACAAGTAATGCTATGGCCTATGTAAATGTCTGCAAGACTACAAGGAATCTGTGAATCTATCCTGCTCTGCTGAGGGATTCTTTATTTTAGTACAGTAGAGAACTGAGATCAGTGCAAATCGAGAATTCAGGCTCTATTTCTGCTCCTTAACATCAGAATTGAAGTTATGTGGCAGATTGTGTTAGAACAAAAACCTTCAGAGAAGCTCAACATTTACTAATAGAAGTACGTTTTTGGACTTGTGATGCTTCTGGTGAGGTTTTTGGACTAGACCAACCAATAGCATTTAGGTTGTTGGGCTCGGTGAGATCATTACAAGCACTTGAAGGTCTGGCTAAGTAATTGGATGATTCACTGTGGTGCTGATGCAAGTCAGCATTGGTAGTCTTTGAAGATGCAGAATGAACTCTACTAATTTAGGGCTAAGCCATGCTGATTTAAACTGATATATATTTAGTGCTCCTATAGCAATTGGTGAAGAAATTGTGTGGAAGTTTCTGTTACAATGATGAAATTAAGAACATGTTTGGTAATATATAAATACTATAAATTGGATCTGAAACGTGTTGTGGTGAGCTATGGCACAAAATCCTCTTTCCATGAATTGAACACATAATGGTTAGAGGTCGGAGATTAATGATATGGCCTATGCAAATATCTACCAAGATTCCTACACCCATCATGCTCTGCTTAGGGACACTGCAATTTGCTCCAGTAGAACTTGAAATCAGTACAAACTGCTAAGTGGGCTAATTGCTATACTCTTTCACTTTCTACACAATTTTCTTTGGTGATTGACATTACATTTTTTATTTGTTCTTCGAAAGAAAAATGAACCTTTCAGTTCCTTTCCATGCTGAAATTTCATACGTTGAGTGCCAGTTACACCAAAAGAGCTGAATGCGTGGAGCCACAAGGTTGCAGGCAGGTCAATATACTTTGGAGCTGTGATCTGTTGCTCTGTAGATCCTGTGCAGTCAGAGGTTTGGTTTGCTTTGTAAGGACGAATTGATTTTTTGAAACTAGAAACTCAAGTGAATTTGGCACACACCATTATATTGTTCTTATTTTGCATCTGATTTTGAGGTGAAGTTCACTTGGTCAGTTAAGTTATAGCCACCAAAGGTTCCATATCAGATTCCACATATCTAAATGCTCATTTATATTACATGAAATACTTCATGAACCATTTGTGCATTTTGTAGGTTGTACAAATGGAACCTTCCATCCCATAATTATGGATATGAATTGGTAAATAACTCTGTAAATTAAAGAAAAAAATTCCTTTTAAGCTTTTGTACATAACTCTGTAAATATTTTCGTGTCAAAAATTACAGATGGTGATAGTAAAATTATATACAATTGCGG

Explanation	CPC Score
noncoding (weak)	-0.185364

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0088300.1	11	4015090	T	C
Osa11LNT0088300.1	11	4017520	T	C
Osa11LNT0088300.1	11	4017965	G	A
Osa11LNT0088300.1	11	4017971	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0088300.1	osa-miR5826	Cleavage	4.0	17.626	1	24
Osa11LNT0088300.1	osa-miR7695-3p	Cleavage	4.5	23.283	1	21
Osa11LNT0088300.1	osa-miR167e-3p	Cleavage	4.0	20.362	1	21
Osa11LNT0088300.1	osa-miR167i-3p	Cleavage	4.0	20.362	1	21
Osa11LNT0088300.1	osa-miR816	Translation	4.0	23.139	1	20
Osa11LNT0088300.1	osa-miR2102-5p	Translation	3.0	22.397	1	20
Osa11LNT0088300.1	osa-miR2876-5p	Cleavage	5.0	21.108	1	21
Osa11LNT0088300.1	osa-miR5339	Cleavage	4.5	15.812	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0088300.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0088300.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0088300.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus