>Osa11LNT0088400.1

AAAAAACAAACTTAGCATATATCTTAACATCATGATCATATAATCAATACAATGCAGTAGGAAAAAGTCTTTTGAGAAATCGTACTGTTAGTGTGGCAAGCCACCAGTTTAAGGAACCTTCTAATCCTCCACTCAAAATGAAAAAAAGAACCTGCTAATATTGATATTTGAGTGCACCTACAACTTGAGTATCCTGTGAGAACTGAAACAACCAACAATAATTTGTAAAGGTATGAGATTAATTCAACATAACTCCTGATACAACAAATATTTTTGCACAACACAACAGCATGGCATACTATCTGGCATTGACAGATGCAGAACATATTTTCGTCTAATTTTACAAAAAGGGGGGTCGTTAAGCATCATAACAAAGTGTCTGGCTCCGGATGATCATTCTAAGAACTCTTCGGGCGAAACTTCCAGACACGGATGTAGTTTTCGCCATGTGTGGTCACAATTTTCTTCATGCCTACTGCCAGGCAAGTGATCTGAGGGCGCAGGCGTGTGGGGATGTTGTCAAGCCGCGCATTTGGAGCAACCTGGCGGACGCTTTTCTTTTCGACTTGCTGATGGGAACTGGATGCTGCTGGGCGGTCTGCATTAACTATGAAACTTCGGATGGTTTCACCGGTTCTTTGGCATATCAAGCGAAGCACACCGTCAATACCGCCGACTGCCAGTGTTGCTGTGTCACCTGGCAAGTGATGTGCGCTGTAGATGACATTTGGGCTAACTCTCTTTTCCCAGAGAGGCCTCAGGGTCCTCAAGTCCCAGCAGTGCGCATAACCAGCAGATGAGCCCGCGAATATCAAATGGCCACTTGTGCTGAATGACAAGCATCTTATTGCTGTTGGTGCAAAAGCTGATTTCAGAACACCTAACTTTTGTCCAGAGGTTTGATCTGCAATAGCTACATTTCCAAATGTAGAACCAGCAGCAATGAGCTGGTCATCTGTTATTGTCAAGCATGTCAAGGGAGAAGAGTGAAGCCGGTAGATGCTTGAGCAACTCCTGCTGTACATATCATATACAAATGCTCTACCATCCTCACAACCAATTATAACCTCTGGATCGGCATAACTCATACATAAGCCACGGTTGAATGAGGCTCCACGAGATTGAAAAATACTTCTCGGCTCACTACGTCTCCATATGCAAAGCTGGGAGCTAGTCAAACCTACAATCTTATTTTCATCAAAATCAAAGTTGACCAGCATTTTAGAACTTGGAACAATGTACTCATTCATGTATTTGCAACTTTCAGCAGACCAAAGTCGGAGAGTCTTATCTCCAACTCCAGTTAAGATTGAACCACTCTTCATGCGGCATATGGTGGCCCTGAAACAAGAAATAGAAAACTGAAAGAAAAAAATGTGGATATTGAGCCACAATCCCAACAGTGCAGCTCCAGAAAAGAAGATACTTGATCAAATCGAACAATATGAAAAAACTAAAAAGAAAATGTTTGAGAACACGAGAACTCTTTTAGTTGATATAACTAATTCACTATGCACAAGAAACAGCCTAAATACAGAAGCTCAGCATAGTACAGGGCTACAGGCTTACTGGTTAGGATGACCAATCCACTGATAAACTTCAGCAGGACCTCTAGAGAAAGACGATGCATGTTCATCAAGTGCAAGCTCCTTGAAGTAACTCTTTATTGAAGTATTAGACCCTGAACTTCTTGCTTGTGGATTCCTCTTGTAATATAGATCCCTCATCAGATGAGCTGTGTCAATAACTCTATTCCATGAGTTGCAGACGGTGGAGCAGCGGGCGAGGTCGAAGTGGTCGTCGAGGCGGGAGAAGACGGAGCGGAGGGTGTCGTCGTTCAGCGCCTGCGCCGTCGACCCCGACCCGCCGCCGCCGCCGCCGGGGCCCCTGCGGCGCTTCAATCCCGCGCTCCCGCTCCGTCCCCGGCTGCTGCTCGTCTCCATGGCCGAACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGATCTCTCTGGAGGCGCCGCCGTTTGCTCGTTGGTTTCACGGTGGCCGGTGGCCGGTGGCCGGCGGCGACTATTC

Explanation	CPC Score
noncoding	-1.04869

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0088400.1	11	4135688	T	C
Osa11LNT0088400.1	11	4137065	A	G
Osa11LNT0088400.1	11	4134905	A	G
Osa11LNT0088400.1	11	4136577	A	C
Osa11LNT0088400.1	11	4136651	C	A
Osa11LNT0088400.1	11	4137618	A	C
Osa11LNT0088400.1	11	4140088	T	C
Osa11LNT0088400.1	11	4140251	A	G
Osa11LNT0088400.1	11	4137472	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0088400.1	osa-miR6252	Cleavage	5.0	7.187	1	23
Osa11LNT0088400.1	osa-miR167h-3p	Cleavage	4.5	14.377	1	21
Osa11LNT0088400.1	osa-miR167h-3p	Cleavage	5.0	24.519	1	21
Osa11LNT0088400.1	osa-miR444a-5p	Translation	5.0	14.982	1	21
Osa11LNT0088400.1	osa-miR5078	Cleavage	2.0	20.344	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0088400.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0088400.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0088400.1	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus