>Osa11LNT0088500.1

CAACTGAAAGCGACTCTAATCACATAAATACCATGTCGCAATCACCCTTACATTACATTACCAAACGACAAAAAACCAGAAAAAAAGAGAAAAAAAAATCAAAACCTAACTAAAGTGTCAGAGACCTGTTTGGCACGAACGAACCTGAAGTGAACTGAAGTACCCGTTCTTCTACATTTTAATTTCCTCTACGAACCTAGACACGACTGACAATACCATCAGCTGCTGGCGCCCCTGAAAATTCCAAAACTTTGAACTTTGGTCTCTGAATTTCTCCTCTGTGTTTTTTTCTCCTCTCTTCTCTATTGTTTGTTCTGAATCTATCAGGAAGGCATGTCAACTAAAACCAAAAAAAAAAAAAATCGACTGGTTACATCGACTCTGGCTACCTATCATCAACGAAAATTTTACCAGTCATTTCTACCATGCTCACGGTACTCCCCATCCGGCAGAAACAAAAATCAGGGATGTGTTCTTGAATTCTCCACTATTTTTAACCTCGCTCGCCGTTACGATGCGGCCAGCGAGGATCCGCGGTGCAGAAAACCCGACACGTGGTGTCGACGAGAGGTACTGGAAGTACCAAGAATTCTCCCTGATTTTTTGCTTCGATTTTGATCTGCCGGTGGAGGCGATCATCGATCCATGGATCGATCGATCGATCGAGCACGGTTAATTTTTGGTTTTTTGGCTGTACCCTAGACTGGTAAAAGAATTACACGATCGACCTGACAGTGGTTAGTGAGCTAATTAGCGTTTGCAGAGGCGTCACGTTCCGTTAATTAGAACGGCTTCTGCAGGTACGTGAACATGTCGCCGAAGGCGGCGCCGTCGCCGGCGGCGCGGGAGAACGCCGCCGGCGAGGGCAGCTCGAAGAGGGAGCTGTCGATGACGAAGCCATCGTCGCCGACGGCGGCCCAGTCGACGCCGGGCCACCCGCCGCATCCGCCGCTGGGCTGGCTCTCGGCGTAGTCGTGGTCGCCGCCGCCGGGGAAGTCGTCCGGCGACGGCGACGGCGACAGCACGTGCTCCGACCCGCTGGAGTCGGTGTGCAGCCGCGGCATCGAGTCGCGGTCCGCCGACCCCGACCGGTCGAAGCACAGCATCTCCGACTCCGGCTCCTGGTCGTAGAACCCATAGTCGGAGAGCTCCACCTTCATCGCCGCCGCGCCGCCGCCGCCGCCGATGCGACCACCCTTCGCCGCCGCCGCCGCCGCCGCCGGCTTCACGTCCTCGCCGGCGTCCACCGTGTCGTACCTCTCGATCACTCCCTTCTTGTTGTAGATTCGGCACAACACCCAATCATCCAACTGCAAAAAAAAATTAACCAAAAAAAAAACTGAAATTATTAGCAAAGTGATCAAGATTGATGTGGAATGCATGCGAGTGGTGGTGGTAAAAAGTTTTTGGTAAATAAATTCGGTGTGATTACGTTTTCCGAGGTGACGTTAAATTCGATAAAGGTTGGGCGCGGGCTTGTCTCTATCTGCGCGTGCGTGAGCCATGACGCCATCCGAGCCTATACCTAGCGGCTACAGCCATGCTACGAAAGCGACAACTCAGGCGTGCTGCAACTTGCCAATTTGGCACACCTTTCAAATTCTTTTCTCAAATTTTAAATAAAAATCATTTTATCAAACCTCTACTGATGATTGATTTGCCCATATCTTCCTAGAGCTCTCTAGATTGAGACCACTATATGAACAAATACAGTATACGGCAATTTCTTTTCTGTTTTTTTTCCTTGTAGAATTTTAAAAAATAAAATGGGGGTAAATTCGTTGGTGAGGAGAAATGATTGAAAGCAAGAGATGATTAGATTAGGAGAAGTAAGTAATTAAAAGAAGTAAATACTAACCCTGAGGGCGTTGTGGGAGGACTTGGAGAGCTTGCGGGCGGCGGCGGAGCGGTCGACGTCGGCGAGGCGGTACTCGTGCATGATCCAGTTGGTCTTGACGCCCTTGGGCGGCTTCCCGGCGTAGAAGACGAGCGCCTTCTTGATCGCCACCGCCCGCGGCGACCCCACCGGCTTGTCCGCCCCCGTCGCCTTCCAGTACCCCGTCCCCGCCGCCCTGTTCGGCCGCTGCCCGTTCGGGTACTTCCGGTCCCGCGGCGAGAAGAAGTACCACTCCTTCTCCCCTCCCATCGCCCTCTCGGGGAGATCCCATGGGTTGAACTTGTAGAGGTCCACCTCGGCGATCACCGGGGCGGCGAGGGGGAGGCCGCCGCACTTGCGGCACAGGTAGTACATCACCAGCTCGTCGTCCGTCGGGTGGAACCTGAACCCCGGCGGCAGCTGCAGCGCACCACCGCACTCCATTCAATCTCCGATCTGAGGCCTTGAAATTAATCAAATTCTAATCACCCTTAACGAAGGCTGGATTAGTCGCTAATGGAAGCTTTCGAAAGTTT

Explanation	CPC Score
noncoding (weak)	-0.989955

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0088500.1	11	4299559	T	G
Osa11LNT0088500.1	11	4299714	G	C
Osa11LNT0088500.1	11	4299801	T	C
Osa11LNT0088500.1	11	4299834	A	G
Osa11LNT0088500.1	11	4300117	C	G
Osa11LNT0088500.1	11	4300143	G	C
Osa11LNT0088500.1	11	4300176	G	A
Osa11LNT0088500.1	11	4300652	G	A
Osa11LNT0088500.1	11	4300935	C	T
Osa11LNT0088500.1	11	4301078	G	A
Osa11LNT0088500.1	11	4301592	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0088500.1	osa-miR5544	Cleavage	4.5	11.759	1	22
Osa11LNT0088500.1	osa-miR396c-3p	Translation	5.0	19.131	1	21
Osa11LNT0088500.1	osa-miR169i-5p.2	Cleavage	3.5	24.816	1	22
Osa11LNT0088500.1	osa-miR2907a	Translation	5.0	24.336	1	22
Osa11LNT0088500.1	osa-miR2907b	Translation	5.0	24.336	1	22
Osa11LNT0088500.1	osa-miR2907c	Translation	5.0	24.336	1	22
Osa11LNT0088500.1	osa-miR2907d	Translation	5.0	24.336	1	22
Osa11LNT0088500.1	osa-miR5522	Translation	4.0	5.721	1	21
Osa11LNT0088500.1	osa-miR5524	Cleavage	4.5	11.803	1	21
Osa11LNT0088500.1	osa-miR5544	Cleavage	2.5	5.966	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0088500.1	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0088500.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0088500.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus