>Osa11LNT0088600.1

AAAAAAAAAACAATTTGTTACAGGTGCAAATATCAATTCAAATCCCACCTCAATTCAAACCCCACGTCACATCCAAATCTCATATCATATCCAAATTTAAATTCACATCCAAAAATCAATCGATTTTACACTTCGTTTTCAACATCCAAACATTGAAGAGCAAACATCCAAACATCAAACATCGCTGTTACAAATTTAAATTCACATCCAAACATTCATTTTACACTGCTGTCGTCGCCGTCGGCTCTCCGCCGCTGTCGCTGTCGAACCTCCTTTGCTGGGACTCCTTTGTTTTGCTTGGGGTTGGGGTTGGGGTTGGAGTGGACTCTCCTCCTCGTCGGAGGGCGTCGGCCGGCGATGGCCGACCTCCCGCAGCCGCCATGCCTCATCTCGCTCCACATGGCCTCCTGAGACCACGACGACGACCCACCCCCCAACCACACCTGCCTCCGGATCCGCGGCCGCTAGGCGCACCTCGAGCTCATCATGCGCATGGCCGCCGACCGACACGCCGAGCTCCACCGCCTCTCCCACCACCGTGCCGTCAGCCCGCACCCTCCCCGCGGCCCGGCGGCGGCGGATCAGCGCCCGAGCTCCGCCACCCACGCCCGAGCTCGCCGCGGCCCGTGCCCGCACCAGCCCTCCCTGTCGCCCGTGCCAGAGCACGCCGCCACCCGCGCCTGTGGATCTGGATGGAGGGAGAGAGGGAGTGGAGGGAGGAGGAGATAAGATAAGGATGGGTAGGTGGAGTTGAGG

Explanation	CPC Score
noncoding (weak)	-0.915688

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0088600.1	11	4505037	T	A
Osa11LNT0088600.1	11	4505038	T	A
Osa11LNT0088600.1	11	4505470	T	C
Osa11LNT0088600.1	11	4505216	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0088600.1	osa-miR5534a	Translation	5.0	11.331	1	21
Osa11LNT0088600.1	osa-miR5534b	Translation	5.0	11.331	1	21
Osa11LNT0088600.1	osa-miR529a	Cleavage	5.0	24.123	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0088600.1	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0088600.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0088600.1	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus