>Osa11LNT0089000.2

TTGTAGTTACACGTGCGTTCTAATAAGAAACATTATTATATCTAGTATGCTTACCAAACCCCTAAACACGTCGGCAATCCTCAAAACACCTGAGCCTCTTGAATTGCATTCTCAGTTCTGGCAACCACCGTTCTGATACCATCTTTTCTTGTTCACCATTAAGATAGCAGCTGGCCACCCTTTCATATTCCTGTTGAGCACTATGTACAGGGTTTAGCAAAACACGATCATTCTCAACCAGATTTCTTCGCGTCTGATCAAGCTGAGGATCCAGTCACCAGTTTGGACAGATTTATTAACAGTTGGGAGTGGGTGCTGACTCATGGATATTTCAACAGTCTACTCTTGATAATTGCTGCCTCCTTTTGCCATCAAATGATACCCAGACGTTACTTCTTGCATCATCTGGTATCTTCAATTCAAGTCGTGCAGAAATCAGGAAGGATGACAAGTCTAAATGACAATGAGTGCGGGCAGATTGGAGTAAACAGCAAACATGGGGCATTTGGATGGACCATTGAGCCTCCAGCTGCACCAGAGTATGCTGTACTGCCAGTCGGTATAGCTACTATCACCCCCATCTCCTTCAACCTTTGTGATTAGATGGTTATGCTCGTAGCATTCAATTTTGGGCAGGTATGGATCAGAACCCTGATCAACAAGTACGTCATTTAGGACATCAAATACTTTTCCTGGCATTGCTTTTCCATTGCAAAAGATCTCACCTCATATATGCATTTTAAGGGTTATATAAACTCCAAGTGTAATGTTACCATGGATGACAGTTACCACTCCAAGTGCTGAGGAATCCTAGCACAAAACCTTGCATCTTGAATATAGAAGGTGTGCACAAAACCATAACCAGGAATCCTAGCAAATATATCATGAACAGCAGGCTCGATGAGAACATTCAAATGATCAAAAGCAAAGCAACTGTAATGCTATGCAGGATATCTGTCAATTGTTGAAACGATAACCTCTTTAAGATGCATCAATTGCAAGGGAAAGCCTGTTTCCTTTCCTCCCTTCTGACGCGGCCCAGTCAACCTCTTTCTTCCTGCACCAGCCTGGCCTAGTGTGTCGGCCTCTTCCTCCTCCCACGAGAGCGCCGTAGGTATAAAACCCCCCTTACATGTACAGCTTGAGACGAATTTCAGGCCTGCTGATCGATTATCAATTGATCTGCACATTTGGACTAGAACTCTGCATTGCAACAAGATTACCTGACCAAACTGATCCAATGTAAACCTGAAAAATGTATCAAGCTTAACCAATGTAAACAAAGAAAAAAATTGAACGGGATGCTCATCAGCTGGGATAACACCGGATAGAATATAACCAGCTCACGGCCATCAAGAAAGAATGTCGACGGCAGCGGCATGCATGACAGGAGATACTTAACGATCTTCTCCACCGAGCAACAGCACAACCCAAGTCATATTAACATGTCGCATGAATCTGGCAAGGCTATTGAATGAAGAGCACCCTGAGTTAAATCATTAGCTTCCAGGTGTTGATGATCCATCAATATGACCTGTTTTTTTTTCTCTCCAGATAAGGGATACCGTTCCTTTCAGCAGATTTTTGTGATCCAAGCTGACAATTGCCTTTAGAATTGCTGGCATCAGATGTCCTAGGATCAACTGTTACCACTGAAGCTTCGATTTACCTTTCCTCAACAGATGTGGAGGCTCCATTGCTGGATGGTTTTCCATTAGTAATACCAGAAGCAACTGATAGAATATAGTCACTATCAAAGGATGCCCCAACTTTTCAAGACCATAAAATCTCAGCTGCTTTATAGTCAATGGCTCATTTTGTTCAGCGCTGAGACTCTGTTTTGTCCTTAAGTGGTCAGTAAACTACTCGACCGTCACTGAGGGTTCAGAACAGATTTTGGATATACTCCTTTGCTTCTAAAAATGTCAGTCATCCCATTTGTTTGGGGAACACATCTCAAGAAGGAAACCATGCCTCAAGGGGATTACTCTCTAATATATAGCTTGACTGAAGTTCTGTCCTGGTGCCATGCAGTTCACCTTGCTCAGTACTACTGTCGTGCTTGCTCAGTACTTTTGGATACACTTCTATGCCACATCCAGATTATGCCGTGCTGCTTCAATGTCTATGTAACATGTTTCCCTCTCCTTCACTGTTCCATCAGATTACAGAAGTGCTGTTTTTGCTACCTTCTGAGGAGAAACCTGGGCTGTTTGTGAGCTGGTCTGTTTGATCATTCTTCACAGGCTTACCATTCCCATTTAATGAGCCATTTTGTGTATCCACAGTCTCTCAGCACAAGTGACATGCTGCTTCCATCTCGAGACCATCACATATGTCCTACCATTCCCTTCCTGGCAATGAAGATAAATGGGCTTCTTCACACTATCAGACACAACTTCTGTCAATCGCTGAACCTGTTTGGCAGAGGGTGCAGTCCCAATCTCAACAGGTATATTCACCACCTCTATCTTTCCCAGTGAGACAGCTTCCTGAACTGCCAAAAGATATAAATCATCTTTAACATCTTCCTCCCAGAGATCAACTATAATTTTGAATCCCTTTGACAATAACCATTCTAGTTTCTCCCCGCTGAATTGTCCTCCCCTCCAAAATGCAACCTCAACAGTCTATCTCATCTGATAGCCAAAAGAATTAGACGCCGCATCAACCCAGCAAGCAGTGCGCCAAGGTCCGCTCCGCAGATGTTCGACGAAATGCTCACAAGCAGCAGGAGATCGAACCAACGAACCTGGCAGTCGAGCCCGATCCGCGAGCTGAAGAACGACGCCCACGCGGCGACGACACCATGCCGCGCGCCACCACCACCTCCCGAAGACACCATGAAGCGCAGGAAGGGAAGGAGAAGAACGCGGTGGCGGGTGGCGACGGGGAAGGGGACGGAGTTGGCCGCGACGGCGTCGACGAGTGAGGCCGTGACGCGGAGGGGATCGGGAGGCGGCGCGGCGCTTCCGCCTCAACTCCGAGCGCCTAAGCCACAGCCGCCGCCCCACCACGCTCGAGCGCTGGCCCTACTCGCCGCCGCCTCCACTCGGACTCGCCGTAGCAGCCGCCGCCTCGGCCGCGCCGCCACCGCCGGCAGCAACGCCGCCGCGGCGACTGAACGGGGAGAGGGGAATCGACACGTCACACGCCACACGCCTCTCC

Explanation	CPC Score
noncoding	-1.02227

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0089000.2	11	4557952	G	A
Osa11LNT0089000.2	11	4558326	G	C
Osa11LNT0089000.2	11	4559077	A	C
Osa11LNT0089000.2	11	4560132	A	G
Osa11LNT0089000.2	11	4560273	A	G
Osa11LNT0089000.2	11	4560517	T	C
Osa11LNT0089000.2	11	4560656	A	T
Osa11LNT0089000.2	11	4561765	T	C
Osa11LNT0089000.2	11	4561917	A	G
Osa11LNT0089000.2	11	4562605	T	C
Osa11LNT0089000.2	11	4563170	A	G
Osa11LNT0089000.2	11	4564443	A	G
Osa11LNT0089000.2	11	4564541	C	G
Osa11LNT0089000.2	11	4565013	T	G
Osa11LNT0089000.2	11	4565769	A	C
Osa11LNT0089000.2	11	4566629	A	G
Osa11LNT0089000.2	11	4559389	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0089000.2	osa-miR5796	Translation	5.0	19.661	1	21
Osa11LNT0089000.2	osa-miR6255	Cleavage	4.5	20.346	1	22
Osa11LNT0089000.2	osa-miR818f	Translation	5.0	11.842	1	21
Osa11LNT0089000.2	osa-miR167a-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167a-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167b	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167b	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167c-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167c-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR319a-3p	Translation	4.5	13.806	1	21
Osa11LNT0089000.2	osa-miR167d-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167d-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167e-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167e-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167f	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167f	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167g	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167g	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167h-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167h-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167i-5p	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167i-5p	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR167j	Translation	5.0	6.75	1	21
Osa11LNT0089000.2	osa-miR167j	Cleavage	5.0	15.442	1	21
Osa11LNT0089000.2	osa-miR1872	Cleavage	4.5	16.463	1	24
Osa11LNT0089000.2	osa-miR2867-3p	Translation	5.0	18.013	1	20
Osa11LNT0089000.2	osa-miR2874	Cleavage	4.5	18.101	1	24
Osa11LNT0089000.2	osa-miR5507	Translation	5.0	13.185	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0089000.2	11	nan	Morphological trait	Seed	RM332	RM229
Osa11LNT0089000.2	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0089000.2	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus